ggKbase home page

scnpilot_solids2_trim150_scaffold_1000_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1000_curated_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..782
DNA (780bp) protein (260aa)
beta-N-acetylhexosaminidase; K12373 hexosaminidase [EC:3.2.1.52]
Beta-N-acetylhexosaminidase n=1 Tax=Niabella soli DSM 19437 RepID=H1NK32_9SPHI
Beta-N-acetylhexosaminidase {ECO:0000313|EMBL:AHF14037.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_solids2_trim150_scaffold_1000_curated_2
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

937..2220
DNA (1284bp) protein (428aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003771E93
acetyl-CoA hydrolase/transferase
Acetyl-CoA hydrolase/transferase {ECO:0000313|EMBL:AEI51905.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids2_trim150_scaffold_1000_curated_3
CG_Bacteroid_02, Bacteroidetes, Bacteria

Not on your lists

2394..3497
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00036ACEAA
putative acyltransferase
Tax=CG_Bacteroid_02
scnpilot_solids2_trim150_scaffold_1000_curated_4
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3747..4571
DNA (825bp) protein (275aa)
Arylamine N-acetyltransferase {ECO:0000313|EMBL:CBN54527.1}; EC=2.3.1.5 {ECO:0000313|EMBL:CBN54527.1};; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
Arylamine N-acetyltransferase (EC:2.3.1.5)
Arylamine N-acetyltransferase n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8FVY7_9CYAN
scnpilot_solids2_trim150_scaffold_1000_curated_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4609..6024)
DNA (1416bp) protein (472aa)
D-lactate dehydrogenase (Cytochrome) n=1 Tax=Niabella soli DSM 19437 RepID=H1NTV0_9SPHI
Dehydrogenase {ECO:0000313|EMBL:KIC95721.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
FAD/FMN-dependent dehydrogenase
scnpilot_solids2_trim150_scaffold_1000_curated_6
Formosa sp. AK20, Formosa, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6438..6800)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Formosa sp. AK20 RepID=M7MGQ4_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EMQ95422.1}; TaxID=1137281 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Formosa.;" source="Formosa sp. AK20.;"
hypothetical protein; K06929
scnpilot_solids2_trim150_scaffold_1000_curated_7
Dokdonia donghaensis, Dokdonia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6766..7107)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Dokdonia donghaensis MED134 PF2_9FLAO">RepID=A2TPF2_9FLAO
Thiol-disulfide oxidoreductase {ECO:0000313|EMBL:KGO05912.1}; TaxID=1300343 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Dokdonia.;" source="Dokdonia donghaensis DSW-1.;"
thiol-disulfide oxidoreductase DCC
scnpilot_solids2_trim150_scaffold_1000_curated_8
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7276..8019
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EH80_9SPHI
Membrane protein {ECO:0000313|EMBL:ETZ21616.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
peptidase membrane zinc metallopeptidase; K06973
scnpilot_solids2_trim150_scaffold_1000_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8202..9491
DNA (1290bp) protein (430aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
FolC bifunctional protein {ECO:0000313|EMBL:AEV98442.1}; EC=6.3.2.17 {ECO:0000313|EMBL:AEV98442.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
FolC bifunctional protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFL1_NIAKG
scnpilot_solids2_trim150_scaffold_1000_curated_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9510..10109)
DNA (600bp) protein (200aa)
NUDIX hydrolase n=1 Tax=Niabella soli DSM 19437 RepID=H1NLT4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIC89949.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
NUDIX hydrolase
scnpilot_solids2_trim150_scaffold_1000_curated_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10054..10605)
DNA (552bp) protein (184aa)
Metal-dependent hydrolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFL3_NIAKG
metal-dependent hydrolase
Metal-dependent hydrolase {ECO:0000313|EMBL:AEV98444.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1000_curated_12
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10609..11322)
DNA (714bp) protein (238aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
FKBP-type peptidyl-prolyl isomerase domain-containing protein; K03773 FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000370A93B
scnpilot_solids2_trim150_scaffold_1000_curated_13
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11488..12516)
DNA (1029bp) protein (343aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855, ECO:0000256|SAAS:SAAS00181223};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
D-fructose 1,6-bisphosphatase; K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11]
Fructose-1,6-bisphosphatase class 1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGK5_NIAKG
scnpilot_solids2_trim150_scaffold_1000_curated_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12616..13875
DNA (1260bp) protein (420aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
aspartate kinase; K00928 aspartate kinase [EC:2.7.2.4]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003736BA3
scnpilot_solids2_trim150_scaffold_1000_curated_15
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14024..15631
DNA (1608bp) protein (536aa)
OmpA/MotB domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMZ3_NIAKG
OmpA family protein {ECO:0000313|EMBL:GAO42550.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
OmpA/MotB domain-containing protein
scnpilot_solids2_trim150_scaffold_1000_curated_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15669..16409)
DNA (741bp) protein (247aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
Lipid A biosynthesis acyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLA3_CHIPD
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:ACU58447.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_1000_curated_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16808..18154
DNA (1347bp) protein (449aa)
Dihydrolipoyllysine-residue succinyltransferase; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
Dihydrolipoyllysine-residue succinyltransferase {ECO:0000313|EMBL:AEW00676.1}; EC=2.3.1.61 {ECO:0000313|EMBL:AEW00676.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI59_NIAKG
scnpilot_solids2_trim150_scaffold_1000_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18158..19495)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NJ97_9SPHI
Transmembrane (4fe-4S) cluster-binding oxidoreductase {ECO:0000313|EMBL:AHF14134.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1000_curated_19
unknown

Not on your lists

19907..20143
DNA (237bp) protein (79aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1000_curated_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20123..21844)
DNA (1722bp) protein (574aa)
PKD domain containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THR4_NIAKG
PKD domain-containing protein
PKD domain containing protein {ECO:0000313|EMBL:AEV97492.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying 20 items

View Taxonomy