ggKbase home page

scnpilot_solids2_trim150_scaffold_358_curated

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_358_curated_1
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..955)
DNA (954bp) protein (318aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
aspartate-semialdehyde dehydrogenase; K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
aspartate-semialdehyde dehydrogenase n=1 Tax=Segetibacter koreensis RepID=UPI00037CA623
scnpilot_solids2_trim150_scaffold_358_curated_2
unknown

Not on your lists

comp(967..1080)
DNA (114bp) protein (38aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_358_curated_3
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1136..1747)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035D1906
Methyltransferase {ECO:0000313|EMBL:KIC94682.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
50S ribosomal protein L11 methyltransferase
scnpilot_solids2_trim150_scaffold_358_curated_4
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1776..3044)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036E89B8
Uncharacterized protein {ECO:0000313|EMBL:KIC92127.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_358_curated_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3077..3667)
DNA (591bp) protein (197aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
guanylate kinase; K00942 guanylate kinase [EC:2.7.4.8]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035E03B8
scnpilot_solids2_trim150_scaffold_358_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3678..4982)
DNA (1305bp) protein (435aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Segetibacter koreensis RepID=UPI000373F4A3
scnpilot_solids2_trim150_scaffold_358_curated_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5051..5710)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THG2_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02808.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_358_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5808..6650)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THH0_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02816.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_358_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6726..7601)
DNA (876bp) protein (292aa)
inorganic polyphosphate/ATP-NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23]
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THG9_NIAKG
scnpilot_solids2_trim150_scaffold_358_curated_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7720..8130
DNA (411bp) protein (137aa)
6-pyruvoyl-tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NSV1_9SPHI
6-pyruvoyl tetrahydrobiopterin synthase {ECO:0000313|EMBL:AHF16736.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_solids2_trim150_scaffold_358_curated_11
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8143..8559
DNA (417bp) protein (139aa)
6-pyruvoyl-tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
6-pyruvoyl tetrahydrobiopterin synthase n=1 Tax=Segetibacter koreensis RepID=UPI0003642537
scnpilot_solids2_trim150_scaffold_358_curated_12
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8581..9186
DNA (606bp) protein (202aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
GTP cyclohydrolase I; K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase 1 n=1 Tax=Niabella soli DSM 19437 RepID=H1NSU9_9SPHI
scnpilot_solids2_trim150_scaffold_358_curated_13
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9190..10068
DNA (879bp) protein (293aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=883154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratimimus CIP 101113.;"
fabD; malonyl CoA-ACP transacylase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Myroides odoratimimus CIP 101113 RepID=H1H3L9_9FLAO
scnpilot_solids2_trim150_scaffold_358_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10132..12237
DNA (2106bp) protein (702aa)
prolyl oligopeptidase; K01322 prolyl oligopeptidase [EC:3.4.21.26]
Prolyl oligopeptidase n=1 Tax=Niabella soli DSM 19437 RepID=H1NPN4_9SPHI
Prolyl endopeptidase {ECO:0000313|EMBL:AHF14962.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_solids2_trim150_scaffold_358_curated_15
unknown

Not on your lists

comp(12346..12717)
DNA (372bp) protein (124aa)
hypothetical protein
scnpilot_solids2_trim150_scaffold_358_curated_16
unknown

Not on your lists

comp(12734..13237)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EX37_EMTOG
hypothetical protein
scnpilot_solids2_trim150_scaffold_358_curated_17
unknown

Not on your lists

comp(13237..13554)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036D5C7B
hypothetical protein
scnpilot_solids2_trim150_scaffold_358_curated_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13608..14177)
DNA (570bp) protein (190aa)
RNA polymerase sigma factor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8S8_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_358_curated_19
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14198..17047)
DNA (2850bp) protein (950aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000365EA3E
Uncharacterized protein {ECO:0000313|EMBL:KIC92552.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_358_curated_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17417..18820
DNA (1404bp) protein (468aa)
Beta-lactamase domain protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMH3_9SPHI
Metallo-beta-lactamase {ECO:0000313|EMBL:AHF14470.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RNA-metabolising metallo-beta-lactamase; K07576 metallo-beta-lactamase family protein
scnpilot_solids2_trim150_scaffold_358_curated_21
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18877..19995
DNA (1119bp) protein (373aa)
FAD-dependent oxidoreductase n=1 Tax=Pontibacter roseus RepID=UPI000375CCAC
FAD-dependent oxidoreductase {ECO:0000313|EMBL:EJF08802.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
FAD dependent oxidoreductase
scnpilot_solids2_trim150_scaffold_358_curated_22
unknown

Not on your lists

20374..20793
DNA (420bp) protein (140aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_358_curated_23
unknown

Not on your lists

20835..21434
DNA (600bp) protein (200aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_358_curated_24
unknown

Not on your lists

21445..22938
DNA (1494bp) protein (498aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_358_curated_25
unknown

Not on your lists

23192..23803
DNA (612bp) protein (204aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_358_curated_26
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24069..24674)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C2A6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EIJ37749.1}; Flags: Precursor;; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
DoxX family protein
scnpilot_solids2_trim150_scaffold_358_curated_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24813..25421
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037060A5
Uncharacterized protein {ECO:0000313|EMBL:AHF15075.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_358_curated_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25418..26146
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NP84_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF15076.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_358_curated_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(26194..26538)
DNA (345bp) protein (115aa)
50S ribosomal protein L20 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THU1_NIAKG
50S ribosomal protein L20P; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_358_curated_30
Tannerella sp. oral taxon BU063, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27190..27966
DNA (777bp) protein (259aa)
Putative RNA methylase n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YTB3_AEQSU
Methyltransferase {ECO:0000313|EMBL:ETK07097.1}; TaxID=1411021 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. oral taxon BU063 isolate Cell 6/7/9.;"
putative RNA methylase
Displaying items 1-30 of 51 in total

View Taxonomy