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scnpilot_solids2_trim150_scaffold_2221_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2221_curated_1
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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3..608
DNA (606bp) protein (202aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNN4_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO44184.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2221_curated_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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669..1436
DNA (768bp) protein (256aa)
phosphosulfolactate synthase; K08097 phosphosulfolactate synthase [EC:4.4.1.19]
Phosphosulfolactate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNN3_NIAKG
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_2221_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1433..2191
DNA (759bp) protein (253aa)
shikimate dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase {ECO:0000313|EMBL:AEW00958.1}; EC=1.1.1.25 {ECO:0000313|EMBL:AEW00958.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Shikimate dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNN2_NIAKG
scnpilot_solids2_trim150_scaffold_2221_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2186..2614)
DNA (429bp) protein (143aa)
Esterase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNN1_NIAKG
esterase
Esterase {ECO:0000313|EMBL:AEW00957.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_2221_curated_5
unknown

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comp(2614..3192)
DNA (579bp) protein (193aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2221_curated_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3206..3769)
DNA (564bp) protein (188aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NNB2_9SPHI
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW00955.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_2221_curated_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(3793..4377)
DNA (585bp) protein (195aa)
nucleoside-triphosphatase rdgB; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
Non-canonical purine NTP pyrophosphatase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNM8_NIAKG
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_2221_curated_8
unknown

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comp(4399..4878)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D9413
scnpilot_solids2_trim150_scaffold_2221_curated_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4922..5989
DNA (1068bp) protein (356aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035CDC72
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_2221_curated_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


6221..6601
DNA (381bp) protein (127aa)
30S ribosomal protein S12 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU62_CHIPD
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_2221_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


6645..7112
DNA (468bp) protein (156aa)
30S ribosomal protein S7 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNB7_9SPHI
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
scnpilot_solids2_trim150_scaffold_2221_curated_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7447..9594
DNA (2148bp) protein (716aa)
elongation factor G n=1 Tax=Segetibacter koreensis RepID=UPI000378A3B6
translation elongation factor G; K02355 elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_2221_curated_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9741..10169
DNA (429bp) protein (143aa)
Putative signal transduction protein with CBS domains n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGJ1_NIAKG
putative signal transduction protein with CBS domains
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:AEV97414.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_2221_curated_14
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10257..10904)
DNA (648bp) protein (216aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GN22_9SPHI
Ligand-binding protein SH3 {ECO:0000313|EMBL:KIC90821.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
two component LuxR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_2221_curated_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10888..11658)
DNA (771bp) protein (257aa)
Two-component sensor histidine kinase n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WNV1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIC90820.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
histidine kinase
scnpilot_solids2_trim150_scaffold_2221_curated_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11616..12281)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7P9U0_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU57521.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_2221_curated_17
unknown

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comp(12352..12669)
DNA (318bp) protein (106aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2221_curated_18
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13051..13317
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000370F53A
Uncharacterized protein {ECO:0000313|EMBL:KIC92863.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2221_curated_19
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13366..14019
DNA (654bp) protein (218aa)
Beta-lactamase domain protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NS88_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO45028.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
beta-lactamase; K06167 PhnP protein
scnpilot_solids2_trim150_scaffold_2221_curated_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(14029..14811)
DNA (783bp) protein (261aa)
beta-lactamase n=1 Tax=Niabella aurantiaca RepID=UPI00036B70C9
Beta-lactamase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_2221_curated_21
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14811..15407)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036BEA20
Uncharacterized protein {ECO:0000313|EMBL:KIC89705.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2221_curated_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15474..16121)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNT3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02018.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_2221_curated_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16099..16542)
DNA (444bp) protein (148aa)
Gliding motility-associated protein GldE n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNT4_NIAKG
gliding motility-associated protein GldE
Gliding motility-associated protein GldE {ECO:0000313|EMBL:KIC96178.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Displaying 23 items

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