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scnpilot_solids2_trim150_scaffold_611_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_611_curated_1
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..439)
DNA (438bp) protein (146aa)
type II site-specific deoxyribonuclease (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00038025A0
Putative uncharacterized protein {ECO:0000313|EMBL:CBX29176.1}; TaxID=201089 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
scnpilot_solids2_trim150_scaffold_611_curated_2
Flavobacterium indicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(553..2523)
DNA (1971bp) protein (657aa)
type I modification methyltransferase, subunit R (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Probable type I modification methyltransferase, subunit R {ECO:0000313|EMBL:CCG53470.1}; EC=3.1.21.3 {ECO:0000313|EMBL:CCG53470.1};; TaxID=1094466 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9).;"
Probable type I modification methyltransferase, subunit R n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XSS8_FLAIG
scnpilot_solids2_trim150_scaffold_611_curated_3
unknown

Not on your lists

comp(2623..2739)
DNA (117bp) protein (39aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_611_curated_4
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3351..4124)
DNA (774bp) protein (258aa)
HAD-superfamily hydrolase, subfamily IIA n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XXR1_PEDHD
HAD family hydrolase {ECO:0000313|EMBL:KIC93579.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
HAD-superfamily hydrolase; K02566 NagD protein
scnpilot_solids2_trim150_scaffold_611_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4821..5633)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A5299
Esterase {ECO:0000313|EMBL:AHF16817.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
esterase
scnpilot_solids2_trim150_scaffold_611_curated_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

5772..6725
DNA (954bp) protein (318aa)
glutathione synthase n=1 Tax=Segetibacter koreensis RepID=UPI00037A8FB4
glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)-like protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_611_curated_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6757..7872
DNA (1116bp) protein (372aa)
Carboxylate-amine ligase ybdK; K06048 carboxylate-amine ligase [EC:6.3.-.-]
Putative glutamate--cysteine ligase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_01609};; Gamma-glutamylcysteine synthetase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Carboxylate-amine ligase Niako_0394 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQQ8_NIAKG
scnpilot_solids2_trim150_scaffold_611_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7875..9161)
DNA (1287bp) protein (429aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL5_NIAKG
scnpilot_solids2_trim150_scaffold_611_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9177..10214)
DNA (1038bp) protein (346aa)
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036ADCB6
scnpilot_solids2_trim150_scaffold_611_curated_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10207..11295)
DNA (1089bp) protein (363aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; K04516 chorismate mutase [EC:5.4.99.5]
cytochrome C4 n=1 Tax=Segetibacter koreensis RepID=UPI00036A60AB
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase {ECO:0000313|EMBL:GAO43274.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_solids2_trim150_scaffold_611_curated_11
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11303..12142)
DNA (840bp) protein (280aa)
prephenate dehydrogenase; K04517 prephenate dehydrogenase [EC:1.3.1.12]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000362F6A3
Prephenate dehydrogenase {ECO:0000313|EMBL:GAO43273.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_solids2_trim150_scaffold_611_curated_12
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12139..13344)
DNA (1206bp) protein (402aa)
LL-diaminopimelate aminotransferase n=1 Tax=Niabella soli DSM 19437 RepID=H1NJQ8_9SPHI
LL-diaminopimelate aminotransferase {ECO:0000313|EMBL:GAO43272.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
LL-diaminopimelate aminotransferase
scnpilot_solids2_trim150_scaffold_611_curated_13
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13349..14182)
DNA (834bp) protein (278aa)
Prephenate dehydratase; K04518 prephenate dehydratase [EC:4.2.1.51]
Prephenate dehydratase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJM2_NIAKG
Prephenate dehydratase {ECO:0000313|EMBL:GAO43271.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_solids2_trim150_scaffold_611_curated_14
unknown

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comp(14478..14690)
DNA (213bp) protein (71aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_611_curated_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14816..15397
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036D8A3A
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_611_curated_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15400..16494
DNA (1095bp) protein (365aa)
Peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI68_NIAKG
peptidase S1 and S6 chymotrypsin/Hap
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:AEW00685.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_611_curated_17
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16501..17397)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003774591
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase {ECO:0000313|EMBL:KHJ37257.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_611_curated_18
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17458..18369
DNA (912bp) protein (304aa)
1-aminocyclopropane-1-carboxylate deaminase n=1 Tax=Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87) RepID=G8X689_FLACA
1-aminocyclopropane-1-carboxylate deaminase
Uncharacterized protein {ECO:0000313|EMBL:KDN54887.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
scnpilot_solids2_trim150_scaffold_611_curated_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18370..18987)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035F8CC5
Uncharacterized protein {ECO:0000313|EMBL:AHF17363.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_611_curated_20
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19047..19475)
DNA (429bp) protein (143aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VX14_DYAFD
FKBP-type peptidylprolyl isomerase
scnpilot_solids2_trim150_scaffold_611_curated_21
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19692..20846
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003814982
Uncharacterized protein {ECO:0000313|EMBL:KIC89359.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_611_curated_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20843..21775
DNA (933bp) protein (311aa)
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
methionyl-tRNA formyltransferase n=1 Tax=Pedobacter agri RepID=UPI000299EE0C
scnpilot_solids2_trim150_scaffold_611_curated_23
unknown

Not on your lists

comp(21772..22362)
DNA (591bp) protein (197aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_611_curated_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22533..23384)
DNA (852bp) protein (284aa)
tRNA dimethylallyltransferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreen
tRNA dimethylallyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TED5_NIAKG
scnpilot_solids2_trim150_scaffold_611_curated_25
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23405..23947)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000381B3EF
Uncharacterized protein {ECO:0000313|EMBL:KIC91478.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_611_curated_26
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24148..25584)
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000374193C
tRNA nucleotidyltransferase {ECO:0000313|EMBL:KIC91477.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
scnpilot_solids2_trim150_scaffold_611_curated_27
Dehalobacter sp. UNSWDHB, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25757..26122)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000364C8BC
Copper-binding protein
Copper binding protein, plastocyanin {ECO:0000313|EMBL:EQB20130.1}; TaxID=1339256 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. UNSWDHB.;"
scnpilot_solids2_trim150_scaffold_611_curated_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26132..27151)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NL20_9SPHI
Membrane protein {ECO:0000313|EMBL:AHF14343.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
putative outer membrane protein
scnpilot_solids2_trim150_scaffold_611_curated_29
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27719..29584)
DNA (1866bp) protein (622aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036FB143
Peptidase M1 {ECO:0000313|EMBL:KIC90436.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
aminopeptidase N
scnpilot_solids2_trim150_scaffold_611_curated_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29650..30336)
DNA (687bp) protein (229aa)
Ribosomal RNA small subunit methyltransferase I; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH91_NIAKG
Displaying items 1-30 of 33 in total

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