ggKbase home page

scnpilot_solids2_trim150_scaffold_3480_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3480_curated_1
unknown

Not on your lists

comp(3..2063)
DNA (2061bp) protein (687aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003717C25
scnpilot_solids2_trim150_scaffold_3480_curated_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


2274..2573
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000362D1FD
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_3480_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


2613..2876
DNA (264bp) protein (88aa)
50S ribosomal protein L27 n=1 Tax=Niabella soli DSM 19437 RepID=H1NKI0_9SPHI
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
scnpilot_solids2_trim150_scaffold_3480_curated_4
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2957..3118
DNA (162bp) protein (54aa)
Putative histone H1-like protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCF7_CHIPD
histone H1-like protein
Putative histone H1-like protein {ECO:0000313|EMBL:ACU59540.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_3480_curated_5
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3547..5724)
DNA (2178bp) protein (726aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000375CF62
integral membrane sensor signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_3480_curated_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5759..7222)
DNA (1464bp) protein (488aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T912_NIAKG
integral membrane sensor signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_3480_curated_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7200..7961)
DNA (762bp) protein (254aa)
mazG; nucleoside triphosphate pyrophosphohydrolase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037BA740
Nucleoside triphosphate pyrophosphohydrolase {ECO:0000313|EMBL:GAO43154.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_solids2_trim150_scaffold_3480_curated_8
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8072..8374)
DNA (303bp) protein (101aa)
Rhodanese domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEF3_CHIPD
rhodanese domain-containing protein
Rhodanese domain protein {ECO:0000313|EMBL:ACU63362.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_3480_curated_9

Not on your lists

comp(8401..9264)
DNA (864bp) protein (288aa)
PASTA domain containing protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NNQ6_9SPHI
PASTA domain protein {ECO:0000313|EMBL:AIA15380.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PASTA domain-containing protein
scnpilot_solids2_trim150_scaffold_3480_curated_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9343..10341)
DNA (999bp) protein (333aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]
D-alanine--D-alanine ligase n=1 Tax=Segetibacter koreensis RepID=UPI0003811A96
scnpilot_solids2_trim150_scaffold_3480_curated_11

Not on your lists

comp(10349..10813)
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:AIA17725.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative uncharacterized protein id=2982180 bin=GWF2_Ignavibacteria_35_20 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
scnpilot_solids2_trim150_scaffold_3480_curated_12
unknown

Not on your lists

comp(10820..10912)
DNA (93bp) protein (31aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_3480_curated_13
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10909..11259)
DNA (351bp) protein (117aa)
ferredoxin n=1 Tax=Segetibacter koreensis RepID=UPI00037C6663
Ferredoxin {ECO:0000313|EMBL:KIC93316.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
4Fe-4S ferredoxin
scnpilot_solids2_trim150_scaffold_3480_curated_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11361..12356
DNA (996bp) protein (332aa)
Acyl-CoA reductase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPA7_NIAKG
acyl-CoA reductase
Acyl-CoA reductase {ECO:0000313|EMBL:AEV96713.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_3480_curated_15
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12808..14034
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000364A3BC
Serine protease {ECO:0000313|EMBL:GAO45706.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
protease Do
scnpilot_solids2_trim150_scaffold_3480_curated_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14457..15509)
DNA (1053bp) protein (351aa)
glucose dehydrogenase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003628669
glucose sorbosone dehydrogenase
Glucose sorbosone dehydrogenase {ECO:0000313|EMBL:ACU62770.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_3480_curated_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15769..16029)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBP7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98179.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_3480_curated_18
Shewanella sp. cp20, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16414..17544)
DNA (1131bp) protein (377aa)
nitrite reductase (EC:1.7.2.1); K00368 nitrite reductase (NO-forming) [EC:1.7.2.1]
Nitrite reductase, copper-containing n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZGQ9_9PROT
Nitrite reductase {ECO:0000313|EMBL:KIO36806.1}; TaxID=1521167 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. cp20.;"
scnpilot_solids2_trim150_scaffold_3480_curated_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(17621..18982)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=6 Tax=Riemerella anatipestifer RepID=E4TC53_RIEAD
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_3480_curated_20
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19362..20408
DNA (1047bp) protein (349aa)
proline racemase; K12658 4-hydroxyproline epimerase [EC:5.1.1.8]
Proline racemase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPT2_NIAKG
Hydroxyproline-2-epimerase {ECO:0000313|EMBL:KIC91158.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_solids2_trim150_scaffold_3480_curated_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(20401..20988)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000360E293
type 12 methyltransferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying 21 items

View Taxonomy