ggKbase home page

scnpilot_solids2_trim150_scaffold_834_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_834_curated_1
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..349)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI0003781498
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAO44769.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
TonB-dependent receptor plug
scnpilot_solids2_trim150_scaffold_834_curated_2
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(357..2426)
DNA (2070bp) protein (690aa)
TonB-dependent receptor plug n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GDC9_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:AKD54362.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
TonB-dependent receptor plug
scnpilot_solids2_trim150_scaffold_834_curated_3
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2817..4970)
DNA (2154bp) protein (718aa)
Transporter, CPA2 family n=1 Tax=Niabella soli DSM 19437 RepID=H1NT91_9SPHI
sodium/hydrogen exchanger
Tax=GWA2_Bacteroidetes_31_9_curated
scnpilot_solids2_trim150_scaffold_834_curated_4
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5326..5790
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KQ57_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:KEO71909.1}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_834_curated_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5915..6343
DNA (429bp) protein (143aa)
GtrA family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGL8_NIAKG
GtrA family protein
GtrA family protein {ECO:0000313|EMBL:AEV98460.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_834_curated_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6426..8345
DNA (1920bp) protein (640aa)
molecular chaperone DnaK n=1 Tax=Segetibacter koreensis RepID=UPI000364C4CA
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
chaperone protein dnaK; K04043 molecular chaperone DnaK
scnpilot_solids2_trim150_scaffold_834_curated_7
unknown

Not on your lists

8501..8950
DNA (450bp) protein (150aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_834_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9157..11742
DNA (2586bp) protein (862aa)
4-alpha-glucanotransferase; K00705 4-alpha-glucanotransferase [EC:2.4.1.25]
4-alpha-glucanotransferase {ECO:0000313|EMBL:AEV98902.1}; EC=2.4.1.25 {ECO:0000313|EMBL:AEV98902.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
4-alpha-glucanotransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPR9_NIAKG
scnpilot_solids2_trim150_scaffold_834_curated_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11751..12779
DNA (1029bp) protein (343aa)
Muconate cycloisomerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPR8_NIAKG
L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:KIC93818.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Muconate cycloisomerase
scnpilot_solids2_trim150_scaffold_834_curated_10
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12793..14442)
DNA (1650bp) protein (550aa)
BatB protein id=3615635 bin=GWF2_Bacteroidetes_43_11 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
BatB/BatC protein; K07114 uncharacterized protein
Tax=GWF2_Bacteroidetes_43_11_curated
scnpilot_solids2_trim150_scaffold_834_curated_11
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14534..16354)
DNA (1821bp) protein (607aa)
xenobiotic-transporting ATPase; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000365BE23
Antibiotic ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIC89147.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_solids2_trim150_scaffold_834_curated_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

16421..16801
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003700443
ribosome-binding factor A; K02834 ribosome-binding factor A
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_834_curated_13
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16818..18038
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036576D3
Uncharacterized protein {ECO:0000313|EMBL:KIC89148.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein; K09808 lipoprotein-releasing system permease protein
scnpilot_solids2_trim150_scaffold_834_curated_14
Thermoplasma acidophilum, Thermoplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

18406..19764
DNA (1359bp) protein (453aa)
4-HYDROXYBENZOATE TRANSPORTER related protein n=1 Tax=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) RepID=Q9HID5_THEAC
4-hydroxybenzoate transporter
4-HYDROXYBENZOATE TRANSPORTER related protein {ECO:0000313|EMBL:CAC12525.1}; TaxID=273075 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Thermoplasmataceae; Thermoplasma.;" source="Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /; NBRC 15155 / AMRC-C165).;"
scnpilot_solids2_trim150_scaffold_834_curated_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19891..23466)
DNA (3576bp) protein (1192aa)
copper transporter n=1 Tax=Segetibacter koreensis RepID=UPI00035CB140
Copper transporter {ECO:0000313|EMBL:KIC96044.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
acriflavin resistance protein
scnpilot_solids2_trim150_scaffold_834_curated_16
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23517..24719)
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D50DD
Putative RND-type efflux pump membrane fusion protein {ECO:0000313|EMBL:GAO41854.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
RND family efflux transporter MFP subunit
scnpilot_solids2_trim150_scaffold_834_curated_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(24744..26150)
DNA (1407bp) protein (469aa)
Outer membrane efflux protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNV4_NIAKG
outer membrane efflux protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_834_curated_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26147..26776)
DNA (630bp) protein (210aa)
Transcriptional regulator, TetR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNV5_NIAKG
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AEW02040.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_834_curated_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27019..27426)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003713AA1
class I peptide chain release factor; K15034 ribosome-associated protein
Class I peptide chain release factor {ECO:0000313|EMBL:ACU57914.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_834_curated_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27554..28318
DNA (765bp) protein (255aa)
geranylgeranylglyceryl phosphate synthase; K07094 putative glycerol-1-phosphate prenyltransferase [EC:2.5.1.-]
Geranylgeranylglyceryl phosphate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL78_NIAKG
Geranylgeranylglyceryl phosphate synthase {ECO:0000313|EMBL:AEW01919.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_834_curated_21
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28315..29031)
DNA (717bp) protein (239aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL87_NIAKG
Putative two-component response regulator {ECO:0000313|EMBL:GAO41727.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
LytTR family two component transcriptional regulator
scnpilot_solids2_trim150_scaffold_834_curated_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(29061..30287)
DNA (1227bp) protein (409aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL88_NIAKG
putative signal transduction histidine kinase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_834_curated_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30503..31534
DNA (1032bp) protein (344aa)
Holliday junction DNA helicase subunit RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP50_NIAKG
scnpilot_solids2_trim150_scaffold_834_curated_24
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31684..32211
DNA (528bp) protein (176aa)
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
S-adenosylmethionine-dependent methyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI0003604065
SAM-dependent methyltransferase {ECO:0000313|EMBL:KIC90624.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_solids2_trim150_scaffold_834_curated_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

32392..32880
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFA2_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97312.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_834_curated_26
unknown

Not on your lists

comp(32947..33057)
DNA (111bp) protein (37aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_834_curated_27
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

33183..34700
DNA (1518bp) protein (506aa)
Probable malate:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00212}; EC=1.1.5.4 {ECO:0000256|HAMAP-Rule:MF_00212};; MQO {ECO:0000256|HAMAP-Rule:MF_00212}; Malate dehydrogenase [quinone] {ECO:0000256|HAMAP-Rule:MF_00212}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
malate/quinone oxidoreductase (EC:1.1.5.4); K00116 malate dehydrogenase (quinone) [EC:1.1.5.4]
Probable malate:quinone oxidoreductase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GJM3_9BACT
scnpilot_solids2_trim150_scaffold_834_curated_28
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34799..35740)
DNA (942bp) protein (314aa)
Putative uncharacterized protein id=3638760 bin=GWF2_Bacteroidetes_41_9 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
arabinose efflux permease family protein
Tax=RBG_13_Bacteroidetes_42_15_curated
Displaying 28 items

View Taxonomy