ggKbase home page

scnpilot_solids2_trim150_scaffold_2720_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2720_curated_1
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..1951
DNA (1950bp) protein (650aa)
Type IV secretory pathway VirD4 components-like protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJN9_ZUNPS
Conjugal transfer protein TraG {ECO:0000313|EMBL:KGO80778.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
type IV secretory pathway VirD4 components-like protein
scnpilot_solids2_trim150_scaffold_2720_curated_2
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1994..3502)
DNA (1509bp) protein (503aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7H0_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY52230.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_solids2_trim150_scaffold_2720_curated_3
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3502..4857)
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7H1_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY52231.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_solids2_trim150_scaffold_2720_curated_4
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4884..5168)
DNA (285bp) protein (95aa)
Helix-turn-helix domain protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7H2_PEDSD
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADY52232.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_solids2_trim150_scaffold_2720_curated_5
unknown

Not on your lists

5221..5412
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2720_curated_6
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5596..5934
DNA (339bp) protein (113aa)
Single-stranded DNA-binding protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FS13_9SPHI
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070, ECO:0000256|RuleBase:RU000524}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
single-strand binding protein; K03111 single-strand DNA-binding protein
scnpilot_solids2_trim150_scaffold_2720_curated_7
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5975..6880
DNA (906bp) protein (302aa)
Phage/plasmid-related protein TIGR03299 n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G302_ECHVK
phage/plasmid-like protein
Phage/plasmid-related protein TIGR03299 {ECO:0000313|EMBL:AGA79376.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
scnpilot_solids2_trim150_scaffold_2720_curated_8
unknown

Not on your lists

6880..6972
DNA (93bp) protein (31aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2720_curated_9
unknown

Not on your lists

6993..7085
DNA (93bp) protein (31aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2720_curated_10
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7033..7410
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDT5_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ24275.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2720_curated_11
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7423..7656
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RS69_LEAB4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ16721.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_solids2_trim150_scaffold_2720_curated_12
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8095..8664
DNA (570bp) protein (190aa)
putative transcriptional regulator; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
Uncharacterized protein n=1 Tax=Prevotella stercorea CAG:629 RepID=R7H793_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KGO80766.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
scnpilot_solids2_trim150_scaffold_2720_curated_13
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8763..9401
DNA (639bp) protein (213aa)
putative transcriptional regulator; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
Putative transcriptional regulator n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BGB0_PETMO
Uncharacterized protein {ECO:0000313|EMBL:KGO80766.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
scnpilot_solids2_trim150_scaffold_2720_curated_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9929..11299)
DNA (1371bp) protein (457aa)
1,4-alpha-glucan branching protein {ECO:0000313|EMBL:KIC93333.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
alpha amylase catalytic subunit id=4383095 bin=GWF2_Bacteroidetes_43_11 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
alpha amylase catalytic region
scnpilot_solids2_trim150_scaffold_2720_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11340..12638)
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NTL4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16803.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2720_curated_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12644..13255)
DNA (612bp) protein (204aa)
Phosphoesterase PA-phosphatase related n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAX4_CHIPD
PA-phosphatase-like phosphoesterase
Phosphoesterase PA-phosphatase related {ECO:0000313|EMBL:ACU59346.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_2720_curated_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13332..15494
DNA (2163bp) protein (721aa)
Sulfatase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI86_NIAKG
sulfatase
Sulfatase {ECO:0000313|EMBL:AEW00703.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_2720_curated_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15501..17330
DNA (1830bp) protein (610aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003763EE2
sulfatase
Sulfatase {ECO:0000313|EMBL:AEW00703.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying 18 items

View Taxonomy