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scnpilot_solids2_trim150_scaffold_301_curated_25

Organism: solids_Sphingobacteriales_3

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 26924..27499

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJP1_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 48.7
  • Coverage: 189.0
  • Bit_score: 188
  • Evalue 6.30e-45
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 48.7
  • Coverage: 189.0
  • Bit_score: 188
  • Evalue 2.00e-45
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU63801.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.7
  • Coverage: 189.0
  • Bit_score: 188
  • Evalue 8.90e-45

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 576
TTGGAACAACTGTTACATCTGATAAAGGGCTGTGCTGCCAATGATGCGAAATGTCAGAAGGTTTTTTACGAAAAATACCTGGGATTTGCATTAAAAACGGTATACCGTTATCTCAGTTCCTATGAAGTCGCCGCCGAAGTTACGAACGATGCTTTCATAAAGATATTCCGGGCTTTCGGCAAATTTGAATATCTGCATGCCGCCAATGTGGAAAGTTTATTGATGGCATGGATGCGCAGGATAGTAATTAATACGACAATAGACCATATACGCGTAAACCAGGCACAAAAAAAGTATCAATCTATAACGGAAGAAGCATGGAACGGACATGAAGCGGAAGTGAGATCAGATGAGCAGTTGCTGTATAAAGAAATTATTGAACTGATAAGAAAGCTAAGTCCTTCATACAGGGCAGTGTTCAACATGTATGTAATTGACGGTTATTCGCACCAGGAAATCGGGAAGATACTGGGCATATCCGTTGGTACATCAAAATCGAACCTTGCCAGGGCCAGGGCGTTTCTGCAAAAATACCTTGTAAAAGATAATAAGGACAATGTGTTATGTTTTACCTGA
PROTEIN sequence
Length: 192
LEQLLHLIKGCAANDAKCQKVFYEKYLGFALKTVYRYLSSYEVAAEVTNDAFIKIFRAFGKFEYLHAANVESLLMAWMRRIVINTTIDHIRVNQAQKKYQSITEEAWNGHEAEVRSDEQLLYKEIIELIRKLSPSYRAVFNMYVIDGYSHQEIGKILGISVGTSKSNLARARAFLQKYLVKDNKDNVLCFT*