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solids_Sphingobacteriales_3

SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_42_1
In projects: scnpilot_solids_dereplicated  |  SCNPILOT_SOLID2_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID2_TRIM150_UNK Manually curated genome

Properties

Avg. coverage: 1.00 Longest contig: 223.84 Kbp Bin length: 5.33 Mbp GC content: 42.32 %
Contigs count: 116 Features count: 4502 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Displaying items 1-50 of 116 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_25_curated
Order: Sphingobacteriales (60.56%)
180 223840 bp 42.45 1.00 88.60
scnpilot_solids2_trim150_scaffold_88_curated
Order: Sphingobacteriales (63.07%)
176 223422 bp 43.72 1.00 89.67
scnpilot_solids2_trim150_scaffold_55_curated
Order: Sphingobacteriales (56.57%)
175 223174 bp 42.82 1.00 90.16
scnpilot_solids2_trim150_scaffold_37_curated
Order: Sphingobacteriales (76.07%)
163 206842 bp 42.40 1.00 89.00
scnpilot_solids2_trim150_scaffold_31_curated
Order: Sphingobacteriales (56.21%)
153 206006 bp 42.49 1.00 89.56
scnpilot_solids2_trim150_scaffold_68_curated
Order: Sphingobacteriales (67.33%)
150 154473 bp 42.11 1.00 88.89
scnpilot_solids2_trim150_scaffold_54_curated
Phylum: Bacteroidetes (88.89%)
126 161835 bp 43.05 1.00 88.66
scnpilot_solids2_trim150_scaffold_114_curated
Order: Sphingobacteriales (69.75%)
119 123545 bp 43.41 1.00 87.44
scnpilot_solids2_trim150_scaffold_94_curated
Order: Sphingobacteriales (65.45%)
110 126398 bp 42.53 1.00 91.22
scnpilot_solids2_trim150_scaffold_199_curated
Phylum: Bacteroidetes (68.32%)
101 115964 bp 42.52 1.00 88.01
scnpilot_solids2_trim150_scaffold_144_curated
Order: Sphingobacteriales (56.44%)
101 101834 bp 42.17 1.00 86.41
scnpilot_solids2_trim150_scaffold_106_curated
Order: Sphingobacteriales (51.06%)
94 116274 bp 39.33 1.00 89.22
scnpilot_solids2_trim150_scaffold_173_curated
Order: Sphingobacteriales (52.44%)
82 87857 bp 43.94 1.00 89.52
scnpilot_solids2_trim150_scaffold_150_curated
Order: Sphingobacteriales (58.75%)
80 115242 bp 42.15 1.00 90.62
scnpilot_solids2_trim150_scaffold_153_curated
Order: Sphingobacteriales (58.23%)
79 97358 bp 42.74 1.00 88.30
scnpilot_solids2_trim150_scaffold_240_curated
Order: Sphingobacteriales (50.65%)
77 97565 bp 42.08 1.00 91.61
scnpilot_solids2_trim150_scaffold_196_curated
Order: Sphingobacteriales (60.27%)
73 80307 bp 42.18 1.00 88.03
scnpilot_solids2_trim150_scaffold_215_curated
Order: Sphingobacteriales (59.72%)
72 71593 bp 42.54 1.00 86.74
scnpilot_solids2_trim150_scaffold_178_curated
Order: Sphingobacteriales (81.69%)
71 84331 bp 42.34 1.00 89.86
scnpilot_solids2_trim150_scaffold_204_curated
Order: Sphingobacteriales (65.22%)
69 77685 bp 41.93 1.00 90.88
scnpilot_solids2_trim150_scaffold_195_curated
Order: Sphingobacteriales (86.76%)
68 80578 bp 41.33 1.00 88.26
scnpilot_solids2_trim150_scaffold_177_curated
Order: Sphingobacteriales (64.18%)
67 86085 bp 43.28 1.00 86.95
scnpilot_solids2_trim150_scaffold_218_curated
Order: Sphingobacteriales (72.31%)
65 70802 bp 42.58 1.00 85.49
scnpilot_solids2_trim150_scaffold_183_curated
Order: Sphingobacteriales (60.34%)
58 83995 bp 43.02 1.00 87.14
scnpilot_solids2_trim150_scaffold_254_curated
Order: Sphingobacteriales (81.03%)
58 62026 bp 41.34 1.00 90.92
scnpilot_solids2_trim150_scaffold_261_curated
Phylum: Bacteroidetes (66.67%)
57 61631 bp 40.91 1.00 91.37
scnpilot_solids2_trim150_scaffold_374_curated
Phylum: Bacteroidetes (60.71%)
56 53952 bp 40.33 1.00 89.26
scnpilot_solids2_trim150_scaffold_255_curated
Phylum: Bacteroidetes (82.14%)
56 61803 bp 41.50 1.00 92.25
scnpilot_solids2_trim150_scaffold_233_curated
Phylum: Bacteroidetes (90.91%)
55 66590 bp 43.14 1.00 85.23
scnpilot_solids2_trim150_scaffold_281_curated
Phylum: Bacteroidetes (70.37%)
54 57816 bp 39.92 1.00 80.72
scnpilot_solids2_trim150_scaffold_280_curated
Phylum: Bacteroidetes (81.48%)
54 57842 bp 43.09 1.00 90.71
scnpilot_solids2_trim150_scaffold_354_curated
Order: Sphingobacteriales (54.72%)
53 65151 bp 42.19 1.00 85.50
scnpilot_solids2_trim150_scaffold_246_curated
Phylum: Bacteroidetes (55.77%)
52 64022 bp 43.86 1.00 85.58
scnpilot_solids2_trim150_scaffold_505_curated
Order: Sphingobacteriales (74%)
50 63481 bp 41.39 1.00 89.60
scnpilot_solids2_trim150_scaffold_235_curated
Order: Sphingobacteriales (68%)
50 66168 bp 43.10 1.00 88.86
scnpilot_solids2_trim150_scaffold_301_curated
Order: Sphingobacteriales (66%)
50 53275 bp 43.22 1.00 89.05
scnpilot_solids2_trim150_scaffold_356_curated
Phylum: Bacteroidetes (78.72%)
47 47876 bp 41.03 1.00 85.19
scnpilot_solids2_trim150_scaffold_353_curated
Order: Sphingobacteriales (67.39%)
46 48079 bp 40.57 1.00 84.47
scnpilot_solids2_trim150_scaffold_355_curated
Order: Sphingobacteriales (60.47%)
43 58771 bp 42.63 1.00 92.22
scnpilot_solids2_trim150_scaffold_328_curated
Phylum: Bacteroidetes (79.07%)
43 50324 bp 42.53 1.00 86.54
scnpilot_solids2_trim150_scaffold_411_curated
Order: Sphingobacteriales (57.89%)
38 42400 bp 39.99 1.00 85.09
scnpilot_solids2_trim150_scaffold_467_curated
Order: Sphingobacteriales (69.44%)
36 38748 bp 42.02 1.00 86.44
scnpilot_solids2_trim150_scaffold_305_curated
Phylum: Bacteroidetes (55.56%)
36 52541 bp 41.68 1.00 89.62
scnpilot_solids2_trim150_scaffold_389_curated
Order: Sphingobacteriales (72.22%)
36 44533 bp 42.35 1.00 90.85
scnpilot_solids2_trim150_scaffold_472_curated
Order: Sphingobacteriales (62.86%)
35 38435 bp 43.22 1.00 89.17
scnpilot_solids2_trim150_scaffold_906_curated
Phylum: Bacteroidetes (71.43%)
35 38968 bp 40.34 1.00 87.53
scnpilot_solids2_trim150_scaffold_733_curated
Phylum: Bacteroidetes (71.43%)
35 51608 bp 42.49 1.00 84.28
scnpilot_solids2_trim150_scaffold_529_curated
Order: Sphingobacteriales (78.79%)
33 35168 bp 41.84 1.00 84.77
scnpilot_solids2_trim150_scaffold_610_curated
Phylum: Bacteroidetes (83.87%)
31 30910 bp 42.10 1.00 89.91
scnpilot_solids2_trim150_scaffold_547_curated
Phylum: Bacteroidetes (70.97%)
31 34725 bp 44.76 1.00 85.22
Displaying items 1-50 of 116 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.