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scnpilot_solids2_trim150_scaffold_451_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_451_curated_1
unknown

Not on your lists

comp(1..159)
DNA (159bp) protein (53aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_451_curated_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(391..1215)
DNA (825bp) protein (275aa)
Nucleoside triphosphate pyrophosphohydrolase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9Y5_9GAMM
Nucleoside triphosphate hydrolase {ECO:0000313|EMBL:GAN45278.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
MazG family protein
scnpilot_solids2_trim150_scaffold_451_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1918..2811)
DNA (894bp) protein (298aa)
Haloalkane dehalogenase {ECO:0000256|HAMAP-Rule:MF_01231}; EC=3.8.1.5 {ECO:0000256|HAMAP-Rule:MF_01231};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
haloalkane dehalogenase (EC:3.8.1.5); K01563 haloalkane dehalogenase [EC:3.8.1.5]
Haloalkane dehalogenase n=1 Tax=Rhizobium sp. CF142 RepID=J2KUD1_9RHIZ
scnpilot_solids2_trim150_scaffold_451_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2904..3470)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUG4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:GAO23787.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_451_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3659..4438)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUG4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:GAO23787.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_451_curated_6
unknown

Not on your lists

comp(4549..5205)
DNA (657bp) protein (219aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_451_curated_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6130..6933)
DNA (804bp) protein (268aa)
3'(2'),5'-bisphosphate nucleotidase (EC:3.1.3.7)
3'(2'),5'-bisphosphate nucleotidase n=2 Tax=Rhodanobacter denitrificans RepID=M4NJU1_9GAMM
3'-5'-bisphosphate nucleotidase {ECO:0000313|EMBL:KGI77303.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_solids2_trim150_scaffold_451_curated_8
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6930..7487)
DNA (558bp) protein (186aa)
ADP-ribose diphosphatase n=1 Tax=Dyella japonica RepID=UPI0002FA0CF4
ADP-ribose diphosphatase {ECO:0000313|EMBL:AIF47213.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ADP-ribose pyrophosphatase
scnpilot_solids2_trim150_scaffold_451_curated_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7537..8418)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VM09_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88250.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_451_curated_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8602..10653
DNA (2052bp) protein (684aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374B2DB
Elongation factor G {ECO:0000313|EMBL:EIL89008.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
translation elongation factor 2 (EF-2/EF-G)
scnpilot_solids2_trim150_scaffold_451_curated_11
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10653..11225
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029AFDD3
Uncharacterized protein {ECO:0000313|EMBL:GAN31968.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_451_curated_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11275..12240)
DNA (966bp) protein (322aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
prolyl aminopeptidase (EC:3.4.11.5)
Proline iminopeptidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXB4_9GAMM
scnpilot_solids2_trim150_scaffold_451_curated_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12322..13554
DNA (1233bp) protein (411aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
3-phosphoglycerate dehydrogenase n=1 Tax=Nevskia ramosa RepID=UPI0003B40B91
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KGI78695.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_solids2_trim150_scaffold_451_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14084..14458)
DNA (375bp) protein (125aa)
Putative transcriptional regulator n=2 Tax=Rhodanobacter RepID=I4WNR1_9GAMM
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGG88210.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_451_curated_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14436..14738)
DNA (303bp) protein (101aa)
Integration host factor subunit alpha n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXB8_9GAMM
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
integration host factor, alpha subunit
scnpilot_solids2_trim150_scaffold_451_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14740..17127)
DNA (2388bp) protein (796aa)
phenylalanyl-tRNA synthetase, beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NF38_9GAMM
scnpilot_solids2_trim150_scaffold_451_curated_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17250..18248)
DNA (999bp) protein (333aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXC0_9GAMM
scnpilot_solids2_trim150_scaffold_451_curated_18
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18355..18714)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Dyella RepID=UPI0002DBB6A4
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
LSU ribosomal protein L20P
scnpilot_solids2_trim150_scaffold_451_curated_19
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18727..18924)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Dyella ginsengisoli RepID=UPI0003474995
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
scnpilot_solids2_trim150_scaffold_451_curated_20

Not on your lists

comp(19229..19633)
DNA (405bp) protein (135aa)
Translation initiation factor IF-3 n=2 Tax=mine drainage metagenome RepID=T1B3I5_9ZZZZ
Translation initiation factor IF-3 {ECO:0000313|EMBL:EQD64447.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3
scnpilot_solids2_trim150_scaffold_451_curated_21
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19800..21707)
DNA (1908bp) protein (636aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEH7_9GAMM
scnpilot_solids2_trim150_scaffold_451_curated_22
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22264..22512
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00035F177C
Esterase {ECO:0000313|EMBL:GAN44970.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_451_curated_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22547..24145)
DNA (1599bp) protein (533aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
carboxylesterase (EC:3.1.1.1); K03929 para-nitrobenzyl esterase [EC:3.1.1.-]
Carboxylesterase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W583_9GAMM
scnpilot_solids2_trim150_scaffold_451_curated_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24302..25813)
DNA (1512bp) protein (504aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W374_9GAMM
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL93915.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Major Facilitator Superfamily transporter
scnpilot_solids2_trim150_scaffold_451_curated_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25810..28041)
DNA (2232bp) protein (744aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NH01_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90174.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_451_curated_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28041..29594)
DNA (1554bp) protein (518aa)
Glycoside hydrolase family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRR3_9GAMM
Glycoside hydrolase family protein {ECO:0000313|EMBL:EIM02155.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
beta-xylosidase
scnpilot_solids2_trim150_scaffold_451_curated_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29709..32084)
DNA (2376bp) protein (792aa)
Alpha-glucosidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7N3_9GAMM
Alpha-glucosidase {ECO:0000313|EMBL:EIL95474.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
family 31 glycosyl hydrolase, alpha-glucosidase
scnpilot_solids2_trim150_scaffold_451_curated_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32107..33666)
DNA (1560bp) protein (520aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Alpha amylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7N2_9GAMM
glycosidase
scnpilot_solids2_trim150_scaffold_451_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33663..35234)
DNA (1572bp) protein (524aa)
Tryptophan halogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQW4_9GAMM
Tryptophan halogenase
Tryptophan halogenase {ECO:0000313|EMBL:AGG90169.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_451_curated_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35323..38181)
DNA (2859bp) protein (953aa)
Outer membrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRR8_9GAMM
Outer membrane protein {ECO:0000313|EMBL:EIM02160.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TonB-dependent receptor
Displaying items 1-30 of 40 in total

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