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SCNpilot_solid_1_scaffold_54

Search features with annotation key words

Displaying items 451-480 of 485 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_54_451
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(486365..487351)
DNA (987bp) protein (329aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein id=12550790 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
SCNpilot_solid_1_scaffold_54_452
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(487405..488403)
DNA (999bp) protein (333aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synth
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9C7_ALIDK rbh
Sua5/YciO/YrdC/YwlC family protein
SCNpilot_solid_1_scaffold_54_453
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(488407..489570)
DNA (1164bp) protein (388aa)
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21)
phosphoribosylaminoimidazole carboxylase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036299E0 rbh
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU36120
SCNpilot_solid_1_scaffold_54_454
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(489567..490064)
DNA (498bp) protein (166aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6B2H2_DELSC
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};;
SCNpilot_solid_1_scaffold_54_455
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

490202..491095
DNA (894bp) protein (298aa)
thioredoxin n=1 Tax=Acidovorax radicis RepID=UPI000237869A rbh
thioredoxin
Thioredoxin {ECO:0000313|EMBL:ACM34708.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (D
SCNpilot_solid_1_scaffold_54_456
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

491095..491910
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHJ8_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34707.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (str
SCNpilot_solid_1_scaffold_54_457
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(491900..492868)
DNA (969bp) protein (323aa)
phosphoribosylaminoimidazole succinocarboxamide synthase (EC:6.3.2.6) Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6)
phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Acidovorax radicis RepID=UPI0002378699 rbh
SCNpilot_solid_1_scaffold_54_458
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

493034..493384
DNA (351bp) protein (117aa)
ribosome hibernation promoting factor n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035E40C3
Ribosome-associated protein Y {ECO:0000313|EMBL:GAD23374.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp.
sigma 54 modulation protein/ribosomal protein S30EA
SCNpilot_solid_1_scaffold_54_459
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

493501..495660
DNA (2160bp) protein (720aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferas
polyphosphate kinase (EC:2.7.4.1)
polyphosphate kinase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035EFE53 rbh
SCNpilot_solid_1_scaffold_54_460
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

495663..496124
DNA (462bp) protein (154aa)
phosphohistidine phosphatase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI000370066A
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:GAD24844.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax
phosphohistidine phosphatase SixA
SCNpilot_solid_1_scaffold_54_461
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(496186..496536)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035F9CE7
Uncharacterized protein {ECO:0000313|EMBL:GAD24843.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
SCNpilot_solid_1_scaffold_54_462
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(496596..497960)
DNA (1365bp) protein (455aa)
Ppx/GppA phosphatase (EC:3.6.1.40)
exopolyphosphatase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00038207A0 rbh
Exopolyphosphatase {ECO:0000313|EMBL:GAD24842.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_solid_1_scaffold_54_463
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

498102..498569
DNA (468bp) protein (156aa)
Putative PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q9B5_ACIAP
putative PTS IIA-like nitrogen-regulatory protein PtsN
Putative PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:ADX48360.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;"
SCNpilot_solid_1_scaffold_54_464
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

498592..499551
DNA (960bp) protein (320aa)
HPr kinase/phosphorylase {ECO:0000255|HAMAP-Rule:MF_01249}; Short=HPrK/P {ECO:0000255|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000255|HAMAP-Rule:MF_01249};; EC=2.7.4.- {ECO:0000255|HAMAP-Rule:MF_01249
HPr kinase n=1 Tax=Comamonas sp. B-9 RepID=UPI0003956369 rbh
hpr kinase/phosphorylase
SCNpilot_solid_1_scaffold_54_465
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(499561..500064)
DNA (504bp) protein (168aa)
Fur family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037B2D6A
ferric uptake regulator family protein
Fur family ferric uptake regulator {ECO:0000313|EMBL:GAD23377.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax
SCNpilot_solid_1_scaffold_54_466
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

500165..500611
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036E3E8E
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sourc
SmpA/OmlA domain-containing protein
SCNpilot_solid_1_scaffold_54_467
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

500663..501478
DNA (816bp) protein (272aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW49_ALIDB rbh
SCNpilot_solid_1_scaffold_54_468
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

501496..501864
DNA (369bp) protein (123aa)
MotA/TolQ/ExbB proton channel n=2 Tax=Alicycliphilus denitrificans RepID=E8TW48_ALIDB
MotA/TolQ/ExbB proton channel
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:AEB86775.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphil
SCNpilot_solid_1_scaffold_54_469
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

501865..502158
DNA (294bp) protein (98aa)
Biopolymer transporter ExbB n=2 Tax=Delftia acidovorans RepID=S2WES8_DELAC
Biopolymer transporter ExbB {ECO:0000313|EMBL:EPD40170.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans C
MotA/TolQ/ExbB proton channel
SCNpilot_solid_1_scaffold_54_470
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

502160..502588
DNA (429bp) protein (143aa)
biopolymer transporter ExbD n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003632D50
Biopolymer transport protein {ECO:0000313|EMBL:GAD23381.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. M
biopolymer transport protein ExbD/TolR
SCNpilot_solid_1_scaffold_54_471
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(502629..502952)
DNA (324bp) protein (108aa)
Diguanylate cyclase {ECO:0000313|EMBL:GAO25416.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1
SCNpilot_solid_1_scaffold_54_472
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


503108..504919
DNA (1812bp) protein (604aa)
Leucine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000255|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00049}; Short=LeuRS {ECO:0000255|HAMAP-Rule:MF_
Leucine--tRNA ligase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=SYL_DELAS
leuS; leucyl-tRNA synthetase
SCNpilot_solid_1_scaffold_54_473
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

504880..505749
DNA (870bp) protein (290aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1268622 species="Bacteria; Proteo
leucyl-tRNA synthetase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003748B41
Suspect SCG annotation. See neighboring gene [SCNpilot_solid_1_scaffold_54_472].
leuS; leucyl-tRNA synthetase
SCNpilot_solid_1_scaffold_54_474
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

505755..506255
DNA (501bp) protein (167aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000379DEA1
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax
rare lipoprotein B
SCNpilot_solid_1_scaffold_54_475
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

506276..507322
DNA (1047bp) protein (349aa)
holA; DNA polymerase III subunit delta (EC:2.7.7.7)
holA; DNA polymerase III subunit delta id=12550769 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
holA; DNA polymerase III subunit delta Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_solid_1_scaffold_54_476
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

507382..508221
DNA (840bp) protein (280aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01967}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01967};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01967}; TaxID=1268622 spe
NAD-dependent deacetylase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003676319
silent information regulator protein sir2
SCNpilot_solid_1_scaffold_54_477
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

508337..509167
DNA (831bp) protein (277aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QBH7_SPILD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADB36159.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (
SCNpilot_solid_1_scaffold_54_478
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

509222..510544
DNA (1323bp) protein (441aa)
gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:000
Gamma-glutamyl phosphate reductase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW34_ALIDB rbh
SCNpilot_solid_1_scaffold_54_479
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

510562..512049
DNA (1488bp) protein (496aa)
TrkA-N domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW33_ALIDB rbh
TrkA domain-containing protein
TrkA domain-containing protein {ECO:0000313|EMBL:GAO25402.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliph
SCNpilot_solid_1_scaffold_54_480
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

512065..513531
DNA (1467bp) protein (489aa)
Trk system potassium uptake protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW32_ALIDB
cation transporter
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alic
Displaying items 451-480 of 485 in total

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