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SCNpilot_solid_1_scaffold_56_97

Organism: SCNPILOT_SOLID_1_Burkholderiales_65_210

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38
Location: 86644..87408

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QAP0_ACIAP similarity UNIREF
DB: UNIREF100
  • Identity: 77.8
  • Coverage: 189.0
  • Bit_score: 302
  • Evalue 5.20e-79
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 77.8
  • Coverage: 189.0
  • Bit_score: 302
  • Evalue 1.50e-79
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADX46081.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source similarity UNIPROT
DB: UniProtKB
  • Identity: 77.8
  • Coverage: 189.0
  • Bit_score: 302
  • Evalue 7.30e-79

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Taxonomy

Acidovorax avenae → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 765
ATGGACGCGGGCTGTCGTGCGCCGAGCCGGGACCCGTTTGCTTCGTTAAAACCAAGGCCGCATTATTGCACTGCAGCATCTATTTGCGTGCACGCGGTTCCAAAAACGCAACACGATGGGATAATCCAGCGCGTCGCCGCACAGGGCGCGGCGGCACATCCCGGTTCCCGACAGCGGGAATTTTCGTCTTTGGCCACCGAACAAGAGCTCTCCGATTTCCTCAAAAGCGTGGAAAGGCGTGCATTCAAGCGCACCGTCTACCACGTGCGCGACGAGGAAGCGGCGCTGGACATCGTGCAGGACAGCATGCTCAAGCTGTCGGTGCACTATGGCGACAAGCCGCCGGCAGAGCTGCCCATGCTGTTTCAGCGCATCCTCTCCAATTGCACGCTGGACTGGTTCCGGCGCCAGAAGACGCGCAAGGCACTGTTCACCAACATGAGCGAATTCGAGGGTCCCGGGGACGACGGTCAGGACTTCGATCTGCTCGAAAGCCTGATCGCTCCCGGGGCATCGGATAATGAAGCCACGCAAAGCCCGGAAAATGCCGTCAGGATGACGCAGACCGTGCAAGCGATAGAAGCCGCGATTGAACAGCTGCCGCCGCGTCAACGCGAGGCATTTTTGATGCGTTACTGGGAAGATATGGATGTTGCGGAGACCGCCGCGGCCATGGGTTGCTCCGAAGGCAGCGTCAAGACGCATTGCTTTCGCGCTGTCCAGACCCTGAGCAAGCTGCTGCAGGCCCAAGGAATTGCACCATGA
PROTEIN sequence
Length: 255
MDAGCRAPSRDPFASLKPRPHYCTAASICVHAVPKTQHDGIIQRVAAQGAAAHPGSRQREFSSLATEQELSDFLKSVERRAFKRTVYHVRDEEAALDIVQDSMLKLSVHYGDKPPAELPMLFQRILSNCTLDWFRRQKTRKALFTNMSEFEGPGDDGQDFDLLESLIAPGASDNEATQSPENAVRMTQTVQAIEAAIEQLPPRQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCFRAVQTLSKLLQAQGIAP*