ggKbase home page

SCNpilot_solid_1_scaffold_230

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_230_1
RIFOXYB2_FULL_PER_ii_54_17_curated, PER-ii, Bacteria

Not on your lists

276..1094
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3J912_9ALTE rbh
putative nuclease of the RecB family Tax=RIFOXYB2_FULL_PER_ii_54_17_curated
putative nuclease of the RecB family
SCNpilot_solid_1_scaffold_230_2
unknown

Not on your lists

1603..2067
DNA (465bp) protein (155aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_230_3
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2133..3227
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000366EF21
hypothetical protein Tax=RBG_13_Bacteroidetes_42_15_curated
hypothetical protein
SCNpilot_solid_1_scaffold_230_4
RHI_OP11_Roizmanbacteria_41_18, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

3387..3830
DNA (444bp) protein (148aa)
3-demethylubiquinone-9 3-methyltransferase; K04750 PhnB protein Tax=RIFCSPHIGHO2_12_OP11_Roizmanbacteria_41_18_curated
Glyoxalase/bleomycin resistance protein/dioxygenase id=4035625 bin=GWF2_Bacteroidetes_40_13 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_solid_1_scaffold_230_5
unknown

Not on your lists

comp(4360..4467)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_230_6
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4540..5151)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037E72B9
Uncharacterized protein {ECO:0000313|EMBL:AHM58702.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirga
hypothetical protein
SCNpilot_solid_1_scaffold_230_7
unknown

Not on your lists

comp(5242..5493)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_230_8
unknown

Not on your lists

5545..5682
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_230_9
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6469..7416)
DNA (948bp) protein (316aa)
Transcriptional regulator, AraC family n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S687_PEDSD
AraC family transcriptional regulator {ECO:0000313|EMBL:AHM58699.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source
AraC family transcriptional regulator
SCNpilot_solid_1_scaffold_230_10
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7750..8688
DNA (939bp) protein (313aa)
Phospholipase/Carboxylesterase id=5024964 bin=GWA2_Bacteroidetes_42_15 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes rbh
phospholipase/Carboxylesterase; K03932 polyhydroxybutyrate depolymerase Tax=GWE2_Bacteroidetes_42_39_curated
phospholipase/Carboxylesterase rbh
SCNpilot_solid_1_scaffold_230_11
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8715..9545)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003663EA9 rbh
G-D-S-L family lipolytic protein rbh
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:AEI52228.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella sl
SCNpilot_solid_1_scaffold_230_12
unknown

Not on your lists

comp(9692..9937)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_230_13
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10054..10278)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI0003480509
Uncharacterized protein {ECO:0000313|EMBL:EJG00609.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp.
hypothetical protein
SCNpilot_solid_1_scaffold_230_14
unknown

Not on your lists

11073..11228
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_230_15
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11235..13481
DNA (2247bp) protein (749aa)
TonB-dependent receptor n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EQR8_RUNSL rbh
TonB-dependent receptor rbh
TonB-dependent receptor {ECO:0000313|EMBL:AEI51959.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformi
SCNpilot_solid_1_scaffold_230_16
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13544..14110
DNA (567bp) protein (189aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EQR6_RUNSL
MotA/TolQ/ExbB proton channel
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:AEI51957.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATC
SCNpilot_solid_1_scaffold_230_17
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14153..14500
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EQR5_RUNSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI51956.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 2953
SCNpilot_solid_1_scaffold_230_18
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14487..18356
DNA (3870bp) protein (1290aa)
Magnesium chelatase {ECO:0000313|EMBL:AEI51955.1}; EC=6.6.1.1 {ECO:0000313|EMBL:AEI51955.1};; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source=
Magnesium chelatase (EC:6.6.1.1)
Magnesium chelatase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EQR4_RUNSL rbh
SCNpilot_solid_1_scaffold_230_19
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18589..20742)
DNA (2154bp) protein (718aa)
cytochrome C n=1 Tax=Dyadobacter beijingensis RepID=UPI0003806EA3 rbh
cytochrome C
Planctomycete cytochrome C {ECO:0000313|EMBL:ACT93199.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain
SCNpilot_solid_1_scaffold_230_20
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20867..22321)
DNA (1455bp) protein (485aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VW68_DYAFD rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93200.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
SCNpilot_solid_1_scaffold_230_21
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22500..24824)
DNA (2325bp) protein (775aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VW69_DYAFD rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93201.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
SCNpilot_solid_1_scaffold_230_22
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(25136..27961)
DNA (2826bp) protein (942aa)
alpha-L-rhamnosidase; K05989 alpha-L-rhamnosidase [EC:3.2.1.40] Tax=RBG_16_Planctomycetes_64_12_curated
Alpha-L-rhamnosidase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YEP1_9SPHI rbh
alpha-L-rhamnosidase
SCNpilot_solid_1_scaffold_230_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(28110..29657)
DNA (1548bp) protein (516aa)
RagB/SusD domain protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VZN6_DYAFD rbh
RagB/SusD domain-containing protein rbh
RagB/SusD domain protein {ECO:0000313|EMBL:ACT93514.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain AT
SCNpilot_solid_1_scaffold_230_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(29681..32764)
DNA (3084bp) protein (1028aa)
TonB-dependent receptor plug n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VZN5_DYAFD rbh
TonB-dependent receptor plug {ECO:0000313|EMBL:ACT93513.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacte
TonB-dependent receptor plug rbh
SCNpilot_solid_1_scaffold_230_25
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32967..33785)
DNA (819bp) protein (273aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Schlesneria paludicola RepID=UPI00029A683C
Uncharacterized protein {ECO:0000313|EMBL:CDX33903.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
SCNpilot_solid_1_scaffold_230_26
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33791..34543)
DNA (753bp) protein (251aa)
garL2; 5-keto-4-deoxy-D-glucarate aldolase (EC:4.1.2.20)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Schlesneria paludicola RepID=UPI00029A683C
Uncharacterized protein {ECO:0000313|EMBL:ERP86128.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10
SCNpilot_solid_1_scaffold_230_27
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(34540..35400)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00035DB57E
xylose isomerase
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ADB50360.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" sourc
SCNpilot_solid_1_scaffold_230_28
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(35400..36197)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003645ED5
Uncharacterized protein {ECO:0000313|EMBL:EJS65750.1}; TaxID=1053179 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus BAG2X1-
Short-chain dehydrogenase/reductase SDR
SCNpilot_solid_1_scaffold_230_29
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(36272..37969)
DNA (1698bp) protein (566aa)
Alpha-L-rhamnosidase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAU7_9BACT rbh
alpha-L-rhamnosidase family protein Tax=RBG_16_Planctomycetes_64_10_curated
alpha-L-rhamnosidase family protein
SCNpilot_solid_1_scaffold_230_30
Tamlana sedimentorum, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(38010..39485)
DNA (1476bp) protein (492aa)
Aldehyde dehydrogenase A, NAD-linked n=1 Tax=unidentified eubacterium SCB49 RepID=A6EN91_9BACT rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:KJD36003.1}; TaxID=1435349 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana sedimentorum.;"
aldehyde dehydrogenase
Displaying items 1-30 of 52 in total

View Taxonomy