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SCNpilot_solid_1_scaffold_15_125

Organism: SCNPILOT_SOLID_1_Sphingobacteriales_41_19

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(158939..159526)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EH42_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 49.5
  • Coverage: 190.0
  • Bit_score: 190
  • Evalue 2.20e-45
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EDM35123.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" sou similarity UNIPROT
DB: UniProtKB
  • Identity: 49.5
  • Coverage: 190.0
  • Bit_score: 190
  • Evalue 3.10e-45
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 44.8
  • Coverage: 192.0
  • Bit_score: 164
  • Evalue 2.80e-38

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Taxonomy

Pedobacter sp. BAL39 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 588
ATGTACCAGCATTTAACTGATGAACAATTATTGGATCTGCTCCGGAAGGGCGACAATCAGGCCTTCGCTGAAATATACGACCGGTATTGGGAACAAATGTCTTTGTATGTATTGAAAGTTACCCGCTCACCCGAAGATGCCTGTGATATTGTGCAGGATGTGTTTGTTTCCATCTGGAAAAGAAGATATGAAATAAACATCTCCGGTTCCATGAAAGCCTATCTTTTAAAAAGTGTTCGCAATCTTTCTATTCGTTATATAGAAAAAAATATCAATAAGCAGAATTTCTTGAACTCTCTGTCAGTATATTATCAGCACCCGGACATTCTTACGGCTGTAAACACACTTGAGCTGCAGGAGCTGGAGTCCAGGCTTGCCGACGTTGTAGCCAGGTTACCGCATAAAATGCAGGAAGTATATGTATTGAGCAGGCAAGAAAATCTTTCTCACAAAGAAATTGCACAACGGCTGGGTATAGCAGAAACCACCGTTAAAAAACAGGTAAGCAATGCATTAAAGCTTATCAGAACTGAAGTAAGCAGCGCAGATATTGTGGCATTGATATTTTTATTTTTTTTAATTGCATAG
PROTEIN sequence
Length: 196
MYQHLTDEQLLDLLRKGDNQAFAEIYDRYWEQMSLYVLKVTRSPEDACDIVQDVFVSIWKRRYEINISGSMKAYLLKSVRNLSIRYIEKNINKQNFLNSLSVYYQHPDILTAVNTLELQELESRLADVVARLPHKMQEVYVLSRQENLSHKEIAQRLGIAETTVKKQVSNALKLIRTEVSSADIVALIFLFFLIA*