ggKbase home page

SCNpilot_solid_1_scaffold_8_102

Organism: SCNPILOT_SOLID_1_Castellaniella_67_33

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: comp(113876..114856)

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70) similarity KEGG
DB: KEGG
  • Identity: 78.0
  • Coverage: 323.0
  • Bit_score: 512
  • Evalue 9.20e-143
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenace similarity UNIPROT
DB: UniProtKB
  • Identity: 78.0
  • Coverage: 323.0
  • Bit_score: 512
  • Evalue 4.60e-142
Pseudouridine synthase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L124_BORA1 similarity UNIREF
DB: UNIREF100
  • Identity: 67.3
  • Coverage: 318.0
  • Bit_score: 423
  • Evalue 2.60e-115
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Castellaniella defragrans → Castellaniella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 981
ATGTCTGACACAGAGATCGCCACCGAGGACGCGGGCCCTGACGAGCCAGTGCTGTTCGAACTGCCCCTGCAAGCCCTCCCGGATCGTCTGGATAAGGTCCTGGCCCGCCTGTTGCCGCAGCATTCCCGCAGCCGCCTGCAGACCTGGATCGAAGACGGGCACGTGCGGGTGGACGGGGAAGTGGGCAAGGTCCGCAGCCGCGTCGGCCCCGGCGCGCGGATCCAGGTCTGGCCGCAGCAGGCGCCCGAGGACCTGGCCTTCGTGCCCGAACCCGTGGCCTTCGACGTGGTCGAGGACAGTCCCGACTGGATCGTGGTGAACAAGCCCGCGGGCCTGGTCACGCATCCGGGAGCGGGCAACTGGCATGGCACCTTGCTGAACGGCCTGCTGTACCGCTATCCCGAATTGCTGCACGTCGCGCGCGCCGGCATCGTCCATCGGCTGGACAAGGACACCTCCGGCCTGCTGGTCGTCGCCCGCACCGAAATCGCGCAGACCGCGCTGGTGCGCCAGCTGCAGGCGCGCACCGTCAAGCGCGAATACTGCGCCCTGGTCCACGGCATCCTGGCCGGGCGGGGCACGGTCGACGCGGCGATCGGCCGCGACGCGCGGGTGCCCGTGCGCATGAGCGCCGAGCGGCCCATCGCGGCCAAGCCCGCCGTCACGCACTATGCCGCGCAGCGCGCGGGACATTGCGGCGACCAGCCCGTGTCCGAGGTGCTGTGCCGCCTGGAAACCGGCCGCACCCACCAGATCCGCGTACACATGGCCCTGCTGAAGCATCCCTTGCTGGGCGACGCCCTGTATGGCGGCCGGCCGGTGGCGGGGGCCGTCCGACAGATGCTGCATGCCCGCGCCCTCAGCTTCCAGGATCCGACGACCGGGCTGCTGCCGTCGTTCACGGCGGAATTGCCCGAGGATTTCCGGGCGGCGCAGGCGCAGGTGACATGGGATGGAGAAAGCCATGACGCGCATTCTTGA
PROTEIN sequence
Length: 327
MSDTEIATEDAGPDEPVLFELPLQALPDRLDKVLARLLPQHSRSRLQTWIEDGHVRVDGEVGKVRSRVGPGARIQVWPQQAPEDLAFVPEPVAFDVVEDSPDWIVVNKPAGLVTHPGAGNWHGTLLNGLLYRYPELLHVARAGIVHRLDKDTSGLLVVARTEIAQTALVRQLQARTVKREYCALVHGILAGRGTVDAAIGRDARVPVRMSAERPIAAKPAVTHYAAQRAGHCGDQPVSEVLCRLETGRTHQIRVHMALLKHPLLGDALYGGRPVAGAVRQMLHARALSFQDPTTGLLPSFTAELPEDFRAAQAQVTWDGESHDAHS*