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SCNpilot_solid_1_scaffold_28_121

Organism: SCNPILOT_SOLID_1_Castellaniella_67_33

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: comp(128418..129002)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Acidovorax sp. NO-1 RepID=H0BW09_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 58.9
  • Coverage: 175.0
  • Bit_score: 193
  • Evalue 1.50e-46
RNA polymerase sigma24 factor {ECO:0000313|EMBL:KIF81196.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspiri similarity UNIPROT
DB: UniProtKB
  • Identity: 61.6
  • Coverage: 177.0
  • Bit_score: 207
  • Evalue 1.40e-50
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 53.3
  • Coverage: 180.0
  • Bit_score: 186
  • Evalue 9.00e-45

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Taxonomy

Herbaspirillum sp. TSA66 → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
ATGGAACTTTTTGCGCTGCTATCCGTTGGAGCAGGGGTGAATGCGGATGCCGACCTCGAGGATGTGCGCCATGCGGTGCGCGCCAGCGCCGGGGATGCGCGCGCCTATTCCTGGCTGGTGATGTGTCACCAGGGGCCTGTTTACCGCTATCTCGTGCGCTTGGTCCGGGTCCCGGAAACTGCGCGCGAACTGACGCAGGACACTTTCCTGCGGGCTTTTCAGGCGATCCCGACCTGGCGGCCGGAGGCGCGGTTCCGGACCTGGCTGTTTCGCATTGCGCACAATCTGGCACTGGATCATCTGCGGCGCGCGAAACATGTGCGCCTGGAGCCGCTGGAAGCGGGCGCCGACGTGCCGGATCCGGCGCCCGGGCCCGAAAGGCGGCTCGAAACCGCGCAGCGGATGCGCCGGCTGGAACAGGCGCTGGCCGCTCTGGCGCCGGCGCATCGCGAGGTCCTGCTGCTGCGCGAGATCGAAGAGATGTCCTACGAGGACATCGCCCGCGCCCTGGATCTGAACCTGGGCACCGTGCGCTCGCGCATTGCCCGCGCCAGGGCGGCATTGCTCGCTGTCCTGAGAACTTGA
PROTEIN sequence
Length: 195
MELFALLSVGAGVNADADLEDVRHAVRASAGDARAYSWLVMCHQGPVYRYLVRLVRVPETARELTQDTFLRAFQAIPTWRPEARFRTWLFRIAHNLALDHLRRAKHVRLEPLEAGADVPDPAPGPERRLETAQRMRRLEQALAALAPAHREVLLLREIEEMSYEDIARALDLNLGTVRSRIARARAALLAVLRT*