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SCNpilot_solid_1_scaffold_28

Search features with annotation key words

Displaying items 121-150 of 186 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_28_120
unknown

Not on your lists

comp(127941..128402)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_solid_1_scaffold_28_121
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128418..129002)
DNA (585bp) protein (195aa)
RNA polymerase sigma factor n=1 Tax=Acidovorax sp. NO-1 RepID=H0BW09_9BURK
RNA polymerase sigma24 factor {ECO:0000313|EMBL:KIF81196.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspiri
ECF subfamily RNA polymerase sigma-24 subunit
SCNpilot_solid_1_scaffold_28_122
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129090..129917
DNA (828bp) protein (276aa)
Putative ABC transport system ATP-binding protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNK4_PUSST rbh
Methionine ABC transporter ATP-binding protein rbh
Methionine ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDM22545.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" so
SCNpilot_solid_1_scaffold_28_123
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129914..130702
DNA (789bp) protein (263aa)
Uncharacterized protein n=2 Tax=Alcaligenes RepID=M5J2M3_9BURK rbh
Uncharacterized ABC transporter, permease component YrbE rbh
Uncharacterized ABC transporter, permease component YrbE {ECO:0000313|EMBL:CDM22546.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellani
SCNpilot_solid_1_scaffold_28_124
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130713..131219
DNA (507bp) protein (169aa)
Virulence protein transporter n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNK2_PUSST
Uncharacterized ABC transporter, periplasmic component YrbD
Uncharacterized ABC transporter, periplasmic component YrbD {ECO:0000313|EMBL:CDM22547.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castell
SCNpilot_solid_1_scaffold_28_125
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

131384..132178
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNK1_PUSST rbh
Surface lipoprotein rbh
Surface lipoprotein {ECO:0000313|EMBL:CDM22548.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defrag
SCNpilot_solid_1_scaffold_28_126
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132276..132926
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DB3780
Uncharacterized ABC transporter, auxiliary component YrbC rbh
Uncharacterized ABC transporter, auxiliary component YrbC {ECO:0000313|EMBL:CDM22549.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellan
SCNpilot_solid_1_scaffold_28_127
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

133031..133822
DNA (792bp) protein (264aa)
ABC transporter ATP-binding protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNJ9_PUSST rbh
ABC-type multidrug transport system, ATPase component rbh
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:CDM22550.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniell
SCNpilot_solid_1_scaffold_28_128
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

133819..134610
DNA (792bp) protein (264aa)
Putative ABC-2 type transporter protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNJ8_PUSST rbh
ABC-type multidrug transport system, permease component rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniel
SCNpilot_solid_1_scaffold_28_129
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134615..134869
DNA (255bp) protein (85aa)
BolA-like protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNJ7_PUSST
YrbA protein
YrbA protein {ECO:0000313|EMBL:CDM22552.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65
SCNpilot_solid_1_scaffold_28_130
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134862..136115
DNA (1254bp) protein (418aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7) rbh
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylp
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Bordetella bronchiseptica D445 RepID=K4TFB3_BORBO rbh
SCNpilot_solid_1_scaffold_28_131
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136126..136791
DNA (666bp) protein (222aa)
ATP phosphoribosyltransferase (EC:2.4.2.17) rbh
ATP phosphoribosyltransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNJ5_PUSST rbh
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; E
SCNpilot_solid_1_scaffold_28_132
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136823..138130
DNA (1308bp) protein (436aa)
Histidinol dehydrogenase (EC:1.1.1.23) rbh
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-R
Histidinol dehydrogenase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KTT6_BORA1 rbh
SCNpilot_solid_1_scaffold_28_133
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138164..138751
DNA (588bp) protein (196aa)
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19) rbh
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, E
imidazoleglycerol-phosphate dehydratase n=1 Tax=Pusillimonas noertemannii RepID=UPI00030AD830 rbh
SCNpilot_solid_1_scaffold_28_134
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

138807..139454
DNA (648bp) protein (216aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HWC6_BORPD rbh
Imidazole glycerol phosphate synthase amidotransferase subunit rbh
SCNpilot_solid_1_scaffold_28_135
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139502..140281
DNA (780bp) protein (260aa)
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC:5.3.1.16) rbh
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNJ1_PUSST rbh
SCNpilot_solid_1_scaffold_28_136
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140278..141126
DNA (849bp) protein (283aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNJ0_PUSST rbh
Imidazole glycerol phosphate synthase cyclase subunit rbh
SCNpilot_solid_1_scaffold_28_137
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

141123..141545
DNA (423bp) protein (141aa)
Phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0
phosphoribosyl-AMP cyclohydrolase n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036C5E49
SCNpilot_solid_1_scaffold_28_138
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

141581..141940
DNA (360bp) protein (120aa)
Phosphoribosyl-ATP pyrophosphatase (EC:3.6.1.31)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HWB5_BORPD
SCNpilot_solid_1_scaffold_28_139
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142088..142456
DNA (369bp) protein (123aa)
MttA/Hcf106 family protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HWB3_BORPD
Diadenosine tetraphosphate hydrolase
Diadenosine tetraphosphate hydrolase {ECO:0000313|EMBL:CDM22562.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Cast
SCNpilot_solid_1_scaffold_28_140
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142466..142702
DNA (237bp) protein (79aa)
Sec-independent protein translocase protein TatA n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNI6_PUSST
Twin-arginine translocation protein TatA
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella
SCNpilot_solid_1_scaffold_28_141
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142728..143066
DNA (339bp) protein (113aa)
Sec-independent protein translocase protein TatB n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNI5_PUSST
Twin-arginine translocation protein TatB
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
SCNpilot_solid_1_scaffold_28_142
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143059..143871
DNA (813bp) protein (271aa)
Sec-independent protein translocase protein TatC n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNI4_PUSST rbh
Twin-arginine translocation protein TatC rbh
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella
SCNpilot_solid_1_scaffold_28_143
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143936..145963)
DNA (2028bp) protein (676aa)
Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC:1.8.1.8) rbh
Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase {ECO:0000313|EMBL:CDM22566.1}; EC=1.8.1.8 {ECO:0000313|EMBL:CDM22566.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betapr
Thiol:disulfide interchange protein DsbD n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GX13_PUSST rbh
SCNpilot_solid_1_scaffold_28_144
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(146013..146441)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031D3551
Periplasmic divalent cation tolerance protein CutA
Periplasmic divalent cation tolerance protein CutA {ECO:0000313|EMBL:CDM22567.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;
SCNpilot_solid_1_scaffold_28_145
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(146561..146941)
DNA (381bp) protein (127aa)
50S ribosomal protein L17 n=4 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=E3HSW9_ACHXA
LSU ribosomal protein L17p
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castel
SCNpilot_solid_1_scaffold_28_146
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(147088..148086)
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase alpha subunit (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:
DNA-directed RNA polymerase subunit alpha n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GX16_PUSST rbh
SCNpilot_solid_1_scaffold_28_147
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(148268..148891)
DNA (624bp) protein (208aa)
30S ribosomal protein S4 n=2 Tax=Alcaligenes RepID=M5ITX2_9BURK rbh
SSU ribosomal protein S4p rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniel
SCNpilot_solid_1_scaffold_28_148
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(148902..149300)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Pusillimonas noertemannii RepID=UPI0002FC16F0
SSU ribosomal protein S11p
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellanie
SCNpilot_solid_1_scaffold_28_149
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(149313..149678)
DNA (366bp) protein (122aa)
30S ribosomal protein S13 n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F6BE54
SSU ribosomal protein S13p
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellanie
Displaying items 121-150 of 186 in total

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