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SCNpilot_solid_1_scaffold_28

Search features with annotation key words

Displaying items 31-60 of 186 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_28_31
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27773..29050
DNA (1278bp) protein (426aa)
Glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8) rbh
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, EC
Glutamate-1-semialdehyde 2,1-aminomutase n=3 Tax=Bordetella bronchiseptica RepID=K0N0S3_BORBM rbh
SCNpilot_solid_1_scaffold_28_32
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29207..29737
DNA (531bp) protein (177aa)
MarR-family transcriptional regulator n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRU8_PUSST
Transcriptional regulator, MarR family rbh
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CDM25996.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Ca
SCNpilot_solid_1_scaffold_28_33
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29917..31143
DNA (1227bp) protein (409aa)
Glutamate N-acetyltransferase / N-acetylglutamate synthase (EC:2.3.1.35 2.3.1.1) rbh
Arginine biosynthesis bifunctional protein ArgJ n=4 Tax=Bordetella RepID=ARGJ_BORBR rbh
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.
SCNpilot_solid_1_scaffold_28_34
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


31309..31620
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRU6_PUSST
LSU ribosomal protein L21p
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castel
SCNpilot_solid_1_scaffold_28_35
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


31639..31899
DNA (261bp) protein (87aa)
50S ribosomal protein L27 n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F1F844
LSU ribosomal protein L27p
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellanie
SCNpilot_solid_1_scaffold_28_36
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32012..33124
DNA (1113bp) protein (371aa)
GTPase Obg n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=OBG_BORPD rbh
GTP-binding protein Obg rbh
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligen
SCNpilot_solid_1_scaffold_28_37
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33230..34393
DNA (1164bp) protein (388aa)
Glutamate 5-kinase / RNA-binding C-terminal domain PUA (EC:2.7.2.11) rbh
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|H
Glutamate 5-kinase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRU1_PUSST rbh
SCNpilot_solid_1_scaffold_28_38
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34435..34923)
DNA (489bp) protein (163aa)
AsnC family transcriptional regulator n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRU0_PUSST
Leucine-responsive regulatory protein
Leucine-responsive regulatory protein {ECO:0000313|EMBL:CDM26003.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Cas
SCNpilot_solid_1_scaffold_28_39
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35195..36445
DNA (1251bp) protein (417aa)
D-amino acid dehydrogenase small subunit (EC:1.4.99.1) rbh
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202, ECO:0000313|EMBL:CDM26004.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteoba
D-amino acid dehydrogenase small subunit n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRT9_PUSST rbh
SCNpilot_solid_1_scaffold_28_40
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36479..37225)
DNA (747bp) protein (249aa)
probable two-component response regulator
Probable two-component response regulator {ECO:0000313|EMBL:CDM26005.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source=
SCNpilot_solid_1_scaffold_28_41
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37362..37733
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031A2A56
Putative transcriptional regulator {ECO:0000313|EMBL:CDM26006.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castel
putative transcriptional regulator
SCNpilot_solid_1_scaffold_28_42
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37960..39873
DNA (1914bp) protein (638aa)
Hydroxymethylpyrimidine phosphate synthase ThiC (EC:4.1.99.17) rbh
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidi
Phosphomethylpyrimidine synthase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=THIC_BORPD rbh
SCNpilot_solid_1_scaffold_28_43
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39887..40615)
DNA (729bp) protein (243aa)
Asp/Glu/hydantoin racemase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y0P8_9RHIZ
Asp/Glu/hydantoin racemase {ECO:0000313|EMBL:EMS43423.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobact
Asp/Glu/hydantoin racemase
SCNpilot_solid_1_scaffold_28_44
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40617..41342)
DNA (726bp) protein (242aa)
Transcriptional regulator, GntR family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WQW6_VEREI
GntR protein {ECO:0000313|EMBL:BAQ50093.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticu
GntR family transcriptional regulator
SCNpilot_solid_1_scaffold_28_45
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41359..42240)
DNA (882bp) protein (294aa)
Polysaccharide deacetylase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WQW7_VEREI rbh
polysaccharide deacetylase rbh
Polysaccharide deacetylase {ECO:0000313|EMBL:ABM60024.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrob
SCNpilot_solid_1_scaffold_28_46
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42251..43543)
DNA (1293bp) protein (431aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003726B67
putative TRAP-type C4-dicarboxylate transport system, large permease component Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
DctM (C4-dicarboxylate permease, large subunit)
SCNpilot_solid_1_scaffold_28_47
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43540..44070)
DNA (531bp) protein (177aa)
DctQ (C4-dicarboxylate permease, small subunit) n=1 Tax=alpha proteobacterium BAL199 RepID=A8TP56_9PROT
DctQ (C4-dicarboxylate permease, small subunit) {ECO:0000313|EMBL:EDP65129.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
SCNpilot_solid_1_scaffold_28_48
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44080..45093)
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA015-N04 RepID=UPI0003807DA5
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
hypothetical protein
SCNpilot_solid_1_scaffold_28_49
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45373..46026)
DNA (654bp) protein (218aa)
OmpA/MotB n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRT6_PUSST
putative outer membrane protein rbh
Putative outer membrane protein {ECO:0000313|EMBL:CDM26009.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellan
SCNpilot_solid_1_scaffold_28_50
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46202..46873
DNA (672bp) protein (224aa)
Cell division ATP-binding protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GT04_PUSST rbh
Cell division transporter, ATP-binding protein FtsE rbh
Cell division transporter, ATP-binding protein FtsE {ECO:0000313|EMBL:CDM26014.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.
SCNpilot_solid_1_scaffold_28_51
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46870..47778
DNA (909bp) protein (303aa)
Cell division protein FtsX n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GT05_PUSST rbh
Cell division protein FtsX rbh
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097, ECO:0000313|EMBL:CDM26015.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellan
SCNpilot_solid_1_scaffold_28_52
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47778..48929
DNA (1152bp) protein (384aa)
micA; A/G-specific adenine glycosylase (EC:3.2.2.-)
A/G-specific adenine glycosylase {ECO:0000313|EMBL:CAJ50673.1}; EC=3.2.2.- {ECO:0000313|EMBL:CAJ50673.1};; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcalige
A/G-specific adenine glycosylase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KUI7_BORA1 rbh
SCNpilot_solid_1_scaffold_28_53
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48935..50077)
DNA (1143bp) protein (381aa)
Rod shape-determining protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GT07_PUSST rbh
rod shape-determining protein rbh
Rod shape-determining protein {ECO:0000313|EMBL:AEC20930.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas
SCNpilot_solid_1_scaffold_28_54
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50074..52110)
DNA (2037bp) protein (679aa)
Penicillin-binding protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GT08_PUSST rbh
Penicillin-binding protein 2 {ECO:0000313|EMBL:CDM26017.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniel
Penicillin-binding protein 2 rbh
SCNpilot_solid_1_scaffold_28_55
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52120..52686)
DNA (567bp) protein (189aa)
Rod shape-determining protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GT09_PUSST
Rod shape-determining protein MreD
Rod shape-determining protein MreD {ECO:0000313|EMBL:CDM26018.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castel
SCNpilot_solid_1_scaffold_28_56
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52667..53551)
DNA (885bp) protein (295aa)
Cell shape-determining protein MreC n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GT10_PUSST rbh
Rod shape-determining protein MreC rbh
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkh
SCNpilot_solid_1_scaffold_28_57
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53578..54621)
DNA (1044bp) protein (348aa)
Rod shape-determining protein MreB n=3 Tax=Alcaligenes PF8_ALCFA">RepID=J0UPF8_ALCFA rbh
Rod shape-determining protein MreB rbh
Rod shape-determining protein MreB {ECO:0000313|EMBL:CDM26020.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castel
SCNpilot_solid_1_scaffold_28_58
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54876..55184
DNA (309bp) protein (103aa)
Aspartyl-tRNA(Asn) amidotransferase subunit C / Glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.6 6.3.5.7)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_0012
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GT12_PUSST
SCNpilot_solid_1_scaffold_28_59
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55189..56712
DNA (1524bp) protein (508aa)
Aspartyl-tRNA(Asn) amidotransferase subunit A / Glutamyl-tRNA(Gln) amidotransferase subunit A (EC:6.3.5.6 6.3.5.7) rbh
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120, ECO:0000313|EM
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GT13_PUSST rbh
SCNpilot_solid_1_scaffold_28_60
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56712..58169
DNA (1458bp) protein (486aa)
Aspartyl-tRNA(Asn) amidotransferase subunit B / Glutamyl-tRNA(Gln) amidotransferase subunit B (EC:6.3.5.6 6.3.5.7) rbh
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.-
glutamyl-tRNA amidotransferase subunit B n=1 Tax=Pusillimonas noertemannii RepID=UPI00036D0849 rbh
Displaying items 31-60 of 186 in total

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