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SCNpilot_solid_1_scaffold_264_54

Organism: SCNPILOT_SOLID_1_Castellaniella_67_33

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: comp(48191..49513)

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_0 similarity UNIPROT
DB: UniProtKB
  • Identity: 91.8
  • Coverage: 440.0
  • Bit_score: 824
  • Evalue 9.50e-236
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9INY8_BORPD similarity UNIREF
DB: UNIREF100
  • Identity: 70.1
  • Coverage: 431.0
  • Bit_score: 629
  • Evalue 1.90e-177
  • rbh
23S rRNA (Uracil-5-)-methyltransferase RumA similarity KEGG
DB: KEGG
  • Identity: 91.8
  • Coverage: 440.0
  • Bit_score: 824
  • Evalue 1.90e-236
  • rbh

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Taxonomy

Castellaniella defragrans → Castellaniella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1323
ATGCCTGAACCCATTGTGTACCCCCTGGATATCGAATCGCTGGATCTCGAGGGGCAGGGGATCGCCCATCACGAAGGCAAAGTCGTCTTCGTGGAGGGCGCCCTGCCCGGAGAACAGGTTCTGGCCCGCGTGACGCGGCGCAAGCCCTCCTACGACAAGGCCAAGGTCGAACGCGTCCTGCGGCCGTCCTCGCAGCGCACCCGGCCGCCGTGCCCGCATTTCGGCGTCTGCGGGGGCTGCGCCATGCAGCACCTGGAGCCCGCCGCGCAGATGGCCGTCAAGCAGCGCTCGCTGGAAGACGCGCTGGAGCATATCGGCAAGGTCCGTCCGCGGCAGATTCTGCCGGCGCTGCAGGGGCCGACCTTCGGCTACCGCCATCGCGCCCGCCTGTCCGTGCGGCTGGTGCAGAAGAAAGGCGGCGTGCTGGTCGGATTCCGCGAACGCGCCAGCAGCTACGTGGCCGACATGCAGTCCTGCCTGGTGCTGCCGCCGCATGTGTCGGCCTTGCTGATGCCTCTGCGCGAACTGATCGGCGGCCTGTCGCGGCCCGAGCGCATGCCGCAGATCGAAGTGGCGGTGGGCGACGAATCCACCGTCTTCTGCCTGCGGCATCTGGAACCGCTGACGCCGGCCGACCTGGATCGCCTGCGCGAGTTCGGCGCGCGGCACGGCATCGACTGGTGGCTGCAGCCCAAGGGGCCGGAAACGGCCCATCCCCTGGACCCGGCGCGAGCCGATGCGCTGGCCTATGCGCTGCCGGCGTACGGCCTGCGCATGCATTACAAGCCCGCCGATTTCACCCAGGTCAATCCGCACATCAACCAGGTGCTGGTGGCGCGGGCGCTGGACCTGCTGGAGATCCAGCCGGACGACCGCGTGGCGGACCTGTTCTGCGGCCTGGGCAATTTCAGCCTGCCGCTGGCCACGCGCAGTCGCGCGGTCGTGGGCATCGAGGGCAGCGCCACGCTGGTGGCCCGCGCCCGCGAGGACGCCGTTCGCCAGGGGCTGGCGGACAAGGCCGAATTCGCCGAATTGAATCTGTTCGAGGTCGATGCCGGCTGGCTGCGCGGCCTGGGCCATTTCGACCGCATGCTGATCGATCCCCCGCGCGAAGGCGCGCTGGCCGTGGCGCAGGCCCTGGCCGACCTGGCGCCGGAAGAACGTCCGCGCCGCGTCGTATACGTCTCCTGTAACCCCGCAACCCTGGCTCGCGATGCCGGGATGCTGTGCCATGTGGGCGGGTGGACGCTGAAGGCCGCGGGCGCGGTCAACATGTTCCCCCACACGGCGCACGTGGAGTCGATCGCGGTATTCGAACCCTGA
PROTEIN sequence
Length: 441
MPEPIVYPLDIESLDLEGQGIAHHEGKVVFVEGALPGEQVLARVTRRKPSYDKAKVERVLRPSSQRTRPPCPHFGVCGGCAMQHLEPAAQMAVKQRSLEDALEHIGKVRPRQILPALQGPTFGYRHRARLSVRLVQKKGGVLVGFRERASSYVADMQSCLVLPPHVSALLMPLRELIGGLSRPERMPQIEVAVGDESTVFCLRHLEPLTPADLDRLREFGARHGIDWWLQPKGPETAHPLDPARADALAYALPAYGLRMHYKPADFTQVNPHINQVLVARALDLLEIQPDDRVADLFCGLGNFSLPLATRSRAVVGIEGSATLVARAREDAVRQGLADKAEFAELNLFEVDAGWLRGLGHFDRMLIDPPREGALAVAQALADLAPEERPRRVVYVSCNPATLARDAGMLCHVGGWTLKAAGAVNMFPHTAHVESIAVFEP*