ggKbase home page

SCNpilot_solid_1_scaffold_264

Search features with annotation key words

Displaying items 31-60 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_264_31
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28951..29625
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1K8_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EAU55183.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus fer
phospholipid methyltransferase
SCNpilot_solid_1_scaffold_264_32
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29713..29925
DNA (213bp) protein (71aa)
Putative uncharacterized protein n=1 Tax=Marinobacter manganoxydans MnI7-9 RepID=G6YZC6_9ALTE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
SCNpilot_solid_1_scaffold_264_33
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30311..30811
DNA (501bp) protein (167aa)
hypothetical protein id=12553558 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_solid_1_scaffold_264_34
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30822..31295
DNA (474bp) protein (158aa)
hypothetical protein id=12553557 bin=BDI species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_solid_1_scaffold_264_35
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31306..31545
DNA (240bp) protein (80aa)
hypothetical protein id=12553556 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_solid_1_scaffold_264_36
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31701..32282
DNA (582bp) protein (194aa)
Peptidase M23B n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AK06_NITEC rbh
peptidase M23B rbh
Peptidase M23B {ECO:0000313|EMBL:ABI58315.1}; Flags: Precursor;; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitros
SCNpilot_solid_1_scaffold_264_37
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32363..32848
DNA (486bp) protein (162aa)
Cytochrome c, class I n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AK05_NITEC
cytochrome c, class I
Cytochrome c, class I {ECO:0000313|EMBL:ABI58316.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutro
SCNpilot_solid_1_scaffold_264_38
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32918..33154)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Alcaligenes sp. HPC1271 RepID=M5J322_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJC62447.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis
hypothetical protein
SCNpilot_solid_1_scaffold_264_39
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34049..34276
DNA (228bp) protein (76aa)
Putative DNA-binding protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I386_BORPD
DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:AJE99598.2}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
SCNpilot_solid_1_scaffold_264_40
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34414..35208
DNA (795bp) protein (265aa)
Exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III {ECO:0000313|EMBL:CDM24234.1}; EC=3.1.11.2 {ECO:0000313|EMBL:CDM24234.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae
exodeoxyribonuclease III n=1 Tax=Bordetella sp. FB-8 RepID=UPI00035C57CA rbh
SCNpilot_solid_1_scaffold_264_41
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35248..35595
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F870A7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM24233.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_264_42
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35592..36251
DNA (660bp) protein (220aa)
Guanylate kinase (EC:2.7.4.8) rbh
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030E2D5F rbh
SCNpilot_solid_1_scaffold_264_43
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36263..36466
DNA (204bp) protein (68aa)
DNA-directed RNA polymerase omega subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R
DNA-directed RNA polymerase subunit omega n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037A25ED
SCNpilot_solid_1_scaffold_264_44
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36484..38748
DNA (2265bp) protein (755aa)
GTP pyrophosphokinase {ECO:0000313|EMBL:CDM24230.1}; EC=2.7.6.5 {ECO:0000313|EMBL:CDM24230.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Ca
GTP pyrophosphokinase (EC:2.7.6.5) rbh
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRH2_PUSST rbh
SCNpilot_solid_1_scaffold_264_45
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38967..40922)
DNA (1956bp) protein (652aa)
Peptidyl-prolyl cis-trans isomerase PpiD (EC:5.2.1.8) rbh
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148, ECO:0000313|EMBL:CDM24226.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria;
Peptidyl-prolyl cis-trans isomerase D n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRG5_PUSST rbh
SCNpilot_solid_1_scaffold_264_46
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41181..41948
DNA (768bp) protein (256aa)
Glycerophosphoryl diester phosphodiesterase (EC:3.1.4.46) rbh
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:CDM24225.1}; EC=3.1.4.46 {ECO:0000313|EMBL:CDM24225.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
Cytoplasmic glycerophosphodiester phosphodiesterase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0B842_ALCFA rbh
SCNpilot_solid_1_scaffold_264_47
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41958..42941
DNA (984bp) protein (328aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rul
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000310792B rbh
hypothetical protein rbh
SCNpilot_solid_1_scaffold_264_48
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42914..43657)
DNA (744bp) protein (248aa)
tRNA pseudouridine synthase A (EC:4.2.1.70) rbh
tRNA pseudouridine synthase A {ECO:0000313|EMBL:CDM24223.1}; EC=4.2.1.70 {ECO:0000313|EMBL:CDM24223.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligen
Pseudouridylate synthase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRG2_PUSST rbh
SCNpilot_solid_1_scaffold_264_49
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43690..44298
DNA (609bp) protein (203aa)
Chorismate--pyruvate lyase (EC:4.1.3.40)
Probable chorismate pyruvate-lyase {ECO:0000256|HAMAP-Rule:MF_01632}; Short=CL {ECO:0000256|HAMAP-Rule:MF_01632};; Short=CPL {ECO:0000256|HAMAP-Rule:MF_01632};; EC=4.1.3.40 {ECO:0000256|HAMAP-Rule:MF_
Probable chorismate pyruvate-lyase n=32 Tax=Bordetella RepID=UBIC_BORBR
SCNpilot_solid_1_scaffold_264_50
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44237..44590)
DNA (354bp) protein (118aa)
Nitrogen regulatory protein n=4 Tax=Bacteria RepID=J0UWT6_ALCFA
Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CDM24221.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castella
SCNpilot_solid_1_scaffold_264_51
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44659..46077
DNA (1419bp) protein (473aa)
Argininosuccinate lyase (EC:4.3.2.1) rbh
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:S
Argininosuccinate lyase n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HR14_ACHXA rbh
SCNpilot_solid_1_scaffold_264_52
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46166..46966)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036518ED rbh
UPF0176 protein L539_0675 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinz
rhodanese superfamily protein
SCNpilot_solid_1_scaffold_264_53
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46963..48180)
DNA (1218bp) protein (406aa)
Major facilitator superfamily transporter n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2J132_PSEUL rbh
Permeases of the major facilitator superfamily rbh
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:CDM24218.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" so
SCNpilot_solid_1_scaffold_264_54
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48191..49513)
DNA (1323bp) protein (441aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_0
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9INY8_BORPD rbh
23S rRNA (Uracil-5-)-methyltransferase RumA rbh
SCNpilot_solid_1_scaffold_264_55
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49506..50285)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRF3_PUSST rbh
Polysaccharide biosynthesis protein WlaX rbh
Polysaccharide biosynthesis protein WlaX {ECO:0000313|EMBL:CDM24216.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="
SCNpilot_solid_1_scaffold_264_56
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50282..51127)
DNA (846bp) protein (282aa)
Putative peptidase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRF2_PUSST rbh
Lipoprotein NlpD rbh
Lipoprotein NlpD {ECO:0000313|EMBL:CDM24215.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragran
SCNpilot_solid_1_scaffold_264_57
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51141..51962)
DNA (822bp) protein (274aa)
Protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77) rbh
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|RuleBase:RU003802, ECO:0000313|EMBL:CDM24214.1}; EC=2.1.1.77 {ECO:0000256|RuleBase:RU003802, ECO:0000313|EMBL:CDM24214.1};; TaxID=1437824 specie
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D6B4DF rbh
SCNpilot_solid_1_scaffold_264_58
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51959..52705)
DNA (747bp) protein (249aa)
5-nucleotidase SurE (EC:3.1.3.5) rbh
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060, ECO:0000313|EMBL:CDM24213.1};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule
stationary phase survival protein SurE n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F791C7
SCNpilot_solid_1_scaffold_264_59
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52821..53483
DNA (663bp) protein (221aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRE9_PUSST
Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY rbh
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:000025
SCNpilot_solid_1_scaffold_264_60
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(53486..54532)
DNA (1047bp) protein (349aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRE8_PUSST rbh
hypothetical protein rbh
Displaying items 31-60 of 65 in total

View Taxonomy