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SCNpilot_solid_1_scaffold_4124_3

Organism: SCNPILOT_SOLID_1_Microbacterium__7

near complete RP 50 / 55 MC: 1 BSCG 48 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: 1415..1870

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0L435_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 41.2
  • Coverage: 153.0
  • Bit_score: 104
  • Evalue 9.50e-20
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KHD78215.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.5
  • Coverage: 157.0
  • Bit_score: 108
  • Evalue 1.20e-20
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog similarity KEGG
DB: KEGG
  • Identity: 41.8
  • Coverage: 141.0
  • Bit_score: 103
  • Evalue 4.50e-20

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Taxonomy

Actinoplanes utahensis → Actinoplanes → Micromonosporales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 456
GTGTTGCAGTATGTGCAACGGCGTGTGCAGGATGCCGGCGACGCGGAGGAGATCGCTACCGAGACGTTCGCCGTCGCCTGGACGAAGCCCACGAGCAGCGACGTCTCGCTGCCGTGGCTGTTCGTGACCGCCCGCAACAAGATCAAGGCGTACCACCGTCAGTCCGCACGGCGCCGTGCGGTGGAGGACCGCGTCGGTGACGAGGCGATGACAGCCGCGGCGGGGCTCAGCCAGATCGACCGCCTGAGCGTGCGCGATGCGGTGGCGTCGCTGACCAGGCGAGAGCGCGAGGTGATCATGCTGACGTACTGGGAGCAGCTGCCCGCCGACGAAGTGGCCGAGGTGCTCGGCTGTGCGGCGGGCTCGGTCTGGACGGCGCTGAGCCGCGGACGGGCGAAGCTGCGCAAGATCCTCGGCGACGATGTTCCTGCCGAGGCAGGGGTGAACGATGGATGA
PROTEIN sequence
Length: 152
VLQYVQRRVQDAGDAEEIATETFAVAWTKPTSSDVSLPWLFVTARNKIKAYHRQSARRRAVEDRVGDEAMTAAAGLSQIDRLSVRDAVASLTRREREVIMLTYWEQLPADEVAEVLGCAAGSVWTALSRGRAKLRKILGDDVPAEAGVNDG*