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scnpilot_solids1_trim150_scaffold_2032

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2032_1
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..241
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002DD3B03
vitamin K epoxide reductase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
scnpilot_solids1_trim150_scaffold_2032_2
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

281..658
DNA (378bp) protein (126aa)
hypothetical protein id=5079246 bin=GWF1_Burkholderiales_GWF1_66_17 species=Pseudomonas sp. GM41(2012) genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
scnpilot_solids1_trim150_scaffold_2032_3
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(929..1765)
DNA (837bp) protein (279aa)
ATPase AAA n=1 Tax=Sphingobium xenophagum RepID=UPI00036C3E55 rbh
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:KGB52289.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
ISBmu7a transposase rbh
scnpilot_solids1_trim150_scaffold_2032_4
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1762..3276)
DNA (1515bp) protein (505aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00036F5DEB rbh
Integrase, catalytic region {ECO:0000313|EMBL:KGB52288.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
transposase rbh
scnpilot_solids1_trim150_scaffold_2032_5
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3516..3767
DNA (252bp) protein (84aa)
Heavy metal-dependent transcription regulator 2 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AI47_RHIFH
Transcriptional regulator, MerR family {ECO:0000313|EMBL:KGB52328.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
soxR; Heavy metal-dependent transcription regulator 2
scnpilot_solids1_trim150_scaffold_2032_6
Rhizobium sp. NT-26, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3896..5140
DNA (1245bp) protein (415aa)
Drug resistance transporter Bcr/CflA subfamily n=1 Tax=Rhizobium sp. RepID=L0NND8_RHISP
Drug resistance transporter Bcr/CflA subfamily {ECO:0000313|EMBL:CCF22391.1}; TaxID=1125847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. NT-26.;"
bicyclomycin resistance protein; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
scnpilot_solids1_trim150_scaffold_2032_7
unknown

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comp(5115..5294)
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2032_8
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5327..6529)
DNA (1203bp) protein (401aa)
Major facilitator superfamily (MFS_1) protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASF7_METEA rbh
major facilitator superfamily (MFS_1) protein rbh
Major facilitator superfamily (MFS_1) protein {ECO:0000313|EMBL:ACS40398.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
scnpilot_solids1_trim150_scaffold_2032_9
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6529..6765)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASF6_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS40397.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
scnpilot_solids1_trim150_scaffold_2032_10
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6782..7465)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASF5_METEA
hypothetical protein; K06196 cytochrome c-type biogenesis protein
Uncharacterized protein {ECO:0000313|EMBL:ACS40396.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
scnpilot_solids1_trim150_scaffold_2032_11
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7462..7845)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASF4_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS40395.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
scnpilot_solids1_trim150_scaffold_2032_12
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7881..10334)
DNA (2454bp) protein (818aa)
copA; copper-transporting ATPase CopA (EC:3.6.3.4) rbh
Copper-transporting ATPase CopA {ECO:0000313|EMBL:ACS40394.1}; EC=3.6.3.4 {ECO:0000313|EMBL:ACS40394.1};; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
Copper-transporting ATPase CopA n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASF3_METEA rbh
scnpilot_solids1_trim150_scaffold_2032_13
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10377..11066)
DNA (690bp) protein (230aa)
Transcriptional regulator, MerR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V506_9BRAD
MerR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
scnpilot_solids1_trim150_scaffold_2032_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11728..12096
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D517_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72675.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2032_15
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12398..13168
DNA (771bp) protein (257aa)
RmlD substrate binding domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X360_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFL47209.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
vitamin K epoxide reductase
Displaying 15 items

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