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scnpilot_solids1_trim150_scaffold_2040

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2040_1
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(593..1420)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9W3E7_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EIZ02967.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
transposon
scnpilot_solids1_trim150_scaffold_2040_2
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1510..1935)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWK4_9GAMM
MerR family transcriptional regulator
Putative transcriptional regulator, MerR family {ECO:0000313|EMBL:ACL73882.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
scnpilot_solids1_trim150_scaffold_2040_3
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2013..4418
DNA (2406bp) protein (802aa)
Putative cadmium-transporting ATPase {ECO:0000313|EMBL:EXI77099.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EXI77099.1};; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5] rbh
Heavy metal translocating P-type ATPase n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WXD3_COMTE rbh
scnpilot_solids1_trim150_scaffold_2040_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4415..5506
DNA (1092bp) protein (364aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] rbh
Lipoprotein signal peptidase n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WXD4_COMTE rbh
scnpilot_solids1_trim150_scaffold_2040_5
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5526..7472
DNA (1947bp) protein (649aa)
Iron permease FTR1 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X728_THIK1 rbh
Iron permease {ECO:0000313|EMBL:AJP48664.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
iron permease FTR1; K07243 high-affinity iron transporter rbh
scnpilot_solids1_trim150_scaffold_2040_6
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7569..8513
DNA (945bp) protein (315aa)
LysR family transcriptional regulator n=1 Tax=Thauera phenylacetica B4P RepID=N6Z262_9RHOO
LysR family transcriptional regulator {ECO:0000313|EMBL:ENO97940.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
LysR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_2040_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8510..8740
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIJ6_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34934.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_2040_8
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8958..10064
DNA (1107bp) protein (369aa)
Conjugal transfer coupling protein TraG n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RDV1_PSEAI
traG1; conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
Conjugal transfer protein TraG {ECO:0000313|EMBL:CAP42547.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_solids1_trim150_scaffold_2040_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10153..11352
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa WC55 RepID=T5KIP5_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDM23742.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2040_10
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11367..12092
DNA (726bp) protein (242aa)
Integrating conjugative element protein n=1 Tax=Pseudomonas aeruginosa CF77 RepID=U8BGR3_PSEAI rbh
Integrating conjugative element protein, PFL_4693 family {ECO:0000313|EMBL:KDD54125.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_2040_11
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12074..12664
DNA (591bp) protein (197aa)
Lytic transglycosylase catalytic n=4 Tax=Proteobacteria RepID=B9MG58_ACIET
lytic transglycosylase subunit
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ACM32649.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_2040_12
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12848..13165
DNA (318bp) protein (106aa)
Integrating conjugative element protein n=1 Tax=Pseudomonas aeruginosa VRFPA06 RepID=V8GC24_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE92923.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
scnpilot_solids1_trim150_scaffold_2040_13
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13170..15362
DNA (2193bp) protein (731aa)
Conjugal transfer protein TraG n=3 Tax=Pseudomonas aeruginosa RepID=V4V8K4_PSEAI rbh
Conjugative coupling factor TraD, PFGI-1 class {ECO:0000313|EMBL:EZP05434.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_2040_14
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15359..16081
DNA (723bp) protein (241aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=B9MG55_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM32646.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_2040_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16180..16560
DNA (381bp) protein (127aa)
Raqprd family integrative conjugative element protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HP48_PSEAI
plasmid protein raqprd
Uncharacterized protein {ECO:0000313|EMBL:ACM32644.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_2040_16
Pseudomonas mosselii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16557..16766
DNA (210bp) protein (70aa)
Uncharacterized protein n=5 Tax=Proteobacteria RepID=A4G6M0_HERAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIN57385.1}; TaxID=1388763 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mosselii SJ10.;"
scnpilot_solids1_trim150_scaffold_2040_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16783..17142
DNA (360bp) protein (120aa)
Integrating conjugative element membrane protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HSS4_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:CDM23734.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2040_18
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17155..17565
DNA (411bp) protein (137aa)
TIGR03750 family conjugative transfer region protein n=4 Tax=Pseudomonas aeruginosa RepID=U5AN40_PSEAI
hypothetical protein
TIGR03750 family conjugative transfer region protein {ECO:0000313|EMBL:EQL42019.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
scnpilot_solids1_trim150_scaffold_2040_19
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17562..18254
DNA (693bp) protein (231aa)
Uncharacterized protein n=5 Tax=Proteobacteria RepID=K4TE21_BORBO rbh
hypothetical protein rbh
Integrating conjugative element protein {ECO:0000313|EMBL:EZP05427.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
scnpilot_solids1_trim150_scaffold_2040_20
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18251..18415
DNA (165bp) protein (55aa)
Integrating conjugative element protein n=1 Tax=Pseudomonas aeruginosa BL20 RepID=U9HP44_PSEAI
Integrating conjugative element protein, PFL_4704 family {ECO:0000313|EMBL:KDD54960.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2040_21
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18388..18924
DNA (537bp) protein (179aa)
Integrating conjugative element protein n=4 Tax=Proteobacteria RepID=T5KXR6_PSEAI
Integrating conjugative element protein, PFL_4704 family {ECO:0000313|EMBL:KDD54960.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2040_22
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18894..19628
DNA (735bp) protein (245aa)
Putative secreted protein n=1 Tax=Xanthomonas campestris pv. vesicatoria (strain 85-10) RepID=Q3BT13_XANC5
Putative secreted protein {ECO:0000313|EMBL:CDM23731.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2040_23
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19628..19879
DNA (252bp) protein (84aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=M5IU19_9BURK
hypothetical protein
Putative exported protein {ECO:0000313|EMBL:CAP41827.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Displaying 23 items

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