ggKbase home page

scnpilot_solids1_trim150_scaffold_2274

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2274_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..101
DNA (99bp) protein (33aa)
KDP operon transcriptional regulatory protein KdpE n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAW6_9SPHN
KDP operon transcriptional regulatory protein KdpE {ECO:0000313|EMBL:ENY80611.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
scnpilot_solids1_trim150_scaffold_2274_2
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

492..1760
DNA (1269bp) protein (423aa)
Integrase n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GK16_9SPHN rbh
Phage integrase {ECO:0000313|EMBL:AJA11526.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
phage integrase family protein
scnpilot_solids1_trim150_scaffold_2274_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1761..4967)
DNA (3207bp) protein (1069aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNW2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AJA11525.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_2274_4
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5029..6693)
DNA (1665bp) protein (555aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2V7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:AJA11524.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2274_5
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6948..7163)
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036571FE
Uncharacterized protein {ECO:0000313|EMBL:AJA11523.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2274_6
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7160..8380)
DNA (1221bp) protein (407aa)
Type IV secretion system protein VirB10 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGH8_9SPHN rbh
Conjugative transfer protein TrbI {ECO:0000313|EMBL:KGB56315.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
type IV secretion system protein VirB10; K03195 type IV secretion system protein VirB10 rbh
scnpilot_solids1_trim150_scaffold_2274_7
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8377..8880)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002DFFC43
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:AJA11521.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
scnpilot_solids1_trim150_scaffold_2274_8
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8877..9212)
DNA (336bp) protein (112aa)
Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ87_SPHAL
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:KGB56314.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
scnpilot_solids1_trim150_scaffold_2274_9
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9209..9892)
DNA (684bp) protein (228aa)
Conjugal transfer protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ86_SPHAL
Conjugative transfer protein TrbF {ECO:0000313|EMBL:KGB56313.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
scnpilot_solids1_trim150_scaffold_2274_10
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9897..10694)
DNA (798bp) protein (266aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ85_SPHAL
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:KGB56312.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Displaying 10 items

View Taxonomy