ggKbase home page

scnpilot_solids1_trim150_scaffold_2297

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2297_1
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..204
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003602A79
Metallophosphoesterase {ECO:0000313|EMBL:EIZ79811.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
antirestriction protein
scnpilot_solids1_trim150_scaffold_2297_2
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

265..567
DNA (303bp) protein (101aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0H6J5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB12965.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2297_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

564..830
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa VRFPA05 RepID=V4V7D7_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EQL41806.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2297_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

827..1426
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037F26E3
Sphingomonas taxi strain 30a NODE_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30409.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2297_5
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1423..1848
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MQ04_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET95419.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
scnpilot_solids1_trim150_scaffold_2297_6
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1900..3204
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002D7FDBD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET95415.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
scnpilot_solids1_trim150_scaffold_2297_7
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3275..3421
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0IF32_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB08254.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
scnpilot_solids1_trim150_scaffold_2297_8
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3479..4420)
DNA (942bp) protein (314aa)
cation transporter n=1 Tax=Sphingomonas melonis RepID=UPI000365712D rbh
Cation efflux protein {ECO:0000313|EMBL:AJA11490.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
cation efflux protein
scnpilot_solids1_trim150_scaffold_2297_9
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4428..4703)
DNA (276bp) protein (92aa)
transcriptional regulator n=1 Tax=Sphingomonas melonis RepID=UPI00037B5DB6
Uncharacterized protein {ECO:0000313|EMBL:EIZ78514.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2297_10
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5270..5560
DNA (291bp) protein (97aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=D4Z8N9_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET95423.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
scnpilot_solids1_trim150_scaffold_2297_11
unknown

Not on your lists

5553..5861
DNA (309bp) protein (103aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2297_12
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5983..6429
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HMR5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB00615.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
MucR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_2297_13
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6426..6854
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GA24_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB00616.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2297_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7032..7415
DNA (384bp) protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:EZP65302.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
Putative uncharacterized protein id=4815861 bin=GWC2_Deltaproteobacteria_55_46 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
hypothetical protein
scnpilot_solids1_trim150_scaffold_2297_15
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7607..7888
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036458AB
Uncharacterized protein {ECO:0000313|EMBL:AJR27083.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2297_16
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8087..8371
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HSQ9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16132.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2297_17
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8374..9831
DNA (1458bp) protein (486aa)
DNA methyltransferase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B361E9 rbh
DNA methyltransferase {ECO:0000313|EMBL:EQB08218.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
putative DNA methyltransferase rbh
scnpilot_solids1_trim150_scaffold_2297_18
unknown

Not on your lists

10255..10464
DNA (210bp) protein (70aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2297_19
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10461..10733
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MQ02_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET95417.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
scnpilot_solids1_trim150_scaffold_2297_20
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10730..11521
DNA (792bp) protein (264aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0H6I4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB12975.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_2297_21
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11535..12161
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ELJ6_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EHJ57877.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_2297_22
unknown

Not on your lists

12173..12418
DNA (246bp) protein (82aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2297_23
Candidatus Regiella insecticola, Candidatus Regiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12469..13038)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002DC0AB8
Putative uncharacterized protein {ECO:0000313|EMBL:EFL91520.1}; TaxID=663321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; aphid secondary symbionts; Candidatus Regiella.;" source="Candidatus Regiella insecticola LSR1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2297_24
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13035..13274)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003085A27
Uncharacterized protein {ECO:0000313|EMBL:EIZ82787.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2297_25
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13472..13873)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IW25_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16055.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
scnpilot_solids1_trim150_scaffold_2297_26
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14181..14573
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IBT4_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA89759.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_solids1_trim150_scaffold_2297_27
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14640..16457
DNA (1818bp) protein (606aa)
Chromosome partitioning protein, ParB family n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IBT5_9SPHN rbh
ParB family chromosome partitioning protein; K03497 chromosome partitioning protein, ParB family rbh
Chromosome partitioning protein, ParB family {ECO:0000313|EMBL:CCA89760.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_solids1_trim150_scaffold_2297_28
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16429..16830
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HG89_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96563.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
scnpilot_solids1_trim150_scaffold_2297_29
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17000..17401)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HDE9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA97414.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
response regulator receiver domain-containing protein
scnpilot_solids1_trim150_scaffold_2297_30
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17423..17821)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D074_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EZP65304.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
Displaying items 1-30 of 49 in total

View Taxonomy