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scnpilot_solids1_trim150_scaffold_2362

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2362_1
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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135..884
-----------------
DNA (750bp)
protein (250aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V445_9BRAD rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EFI52725.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
putative 3-hydroxybutyryl-CoA dehydratase rbh
scnpilot_solids1_trim150_scaffold_2362_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1109..1258)
-----------------
DNA (150bp)
protein (50aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V446_9BRAD
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein; K11473 glycolate oxidase iron-sulfur subunit
scnpilot_solids1_trim150_scaffold_2362_3
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1258..1575)
-----------------
DNA (318bp)
protein (106aa)
Transposase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I236_9RHIZ
ISBm1, transposase orfB {ECO:0000313|EMBL:CDN51667.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
transposase
scnpilot_solids1_trim150_scaffold_2362_4
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1587..2012)
-----------------
DNA (426bp)
protein (142aa)
Transposase of ISMex15, IS5 family (ORF 1) n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H3Y2_9RHIZ
Transposase {ECO:0000313|EMBL:KKC33105.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
putative transposase
scnpilot_solids1_trim150_scaffold_2362_5
unknown

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comp(2636..2839)
-----------------
DNA (204bp)
protein (68aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2362_6
unknown

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3270..4154
-----------------
DNA (885bp)
protein (295aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2362_7
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4016..4360)
-----------------
DNA (345bp)
protein (115aa)
Transposase (Class II) n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X0M6_9BRAD
Transposase (Class II) {ECO:0000313|EMBL:EAQ34211.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
transposase (class II)
scnpilot_solids1_trim150_scaffold_2362_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4452..5864)
-----------------
DNA (1413bp)
protein (471aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PNC6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42279.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
scnpilot_solids1_trim150_scaffold_2362_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5940..6638)
-----------------
DNA (699bp)
protein (233aa)
Cyclase family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V422_9BRAD rbh
Cyclase family protein {ECO:0000313|EMBL:EFI52702.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
cyclase family protein rbh
scnpilot_solids1_trim150_scaffold_2362_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6654..7394)
-----------------
DNA (741bp)
protein (247aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PI28_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42277.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
scnpilot_solids1_trim150_scaffold_2362_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7395..9191)
-----------------
DNA (1797bp)
protein (599aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PL32_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42276.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_2362_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9188..10063)
-----------------
DNA (876bp)
protein (292aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PRZ3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42275.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_2362_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10226..11419)
-----------------
DNA (1194bp)
protein (398aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PNC3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42274.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
extracellular ligand-binding receptor rbh
scnpilot_solids1_trim150_scaffold_2362_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11694..12647
-----------------
DNA (954bp)
protein (318aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PV96_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42273.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
LysR family transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_2362_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12913..13896)
-----------------
DNA (984bp)
protein (328aa)
Uncharacterized protein n=2 Tax=Afipia RepID=D6V7Z2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29206.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_2362_16
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14178..15146)
-----------------
DNA (969bp)
protein (323aa)
4,5-dihydroxyphthalate decarboxylase (EC:4.1.1.55); K04102 4,5-dihydroxyphthalate decarboxylase [EC:4.1.1.55] rbh
Putative 4,5-dihydroxyphthalate decarboxylase (DHP decarboxylase) {ECO:0000313|EMBL:CAL62255.1}; EC=4.1.1.55 {ECO:0000313|EMBL:CAL62255.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
Putative 4,5-dihydroxyphthalate decarboxylase (DHP decarboxylase) n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G6W8_HERAR rbh
scnpilot_solids1_trim150_scaffold_2362_17
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15193..16500)
-----------------
DNA (1308bp)
protein (436aa)
amidase (EC:3.5.1.4); K01426 amidase [EC:3.5.1.4] rbh
Putative amidase {ECO:0000313|EMBL:CAL62256.1}; EC=3.5.1.4 {ECO:0000313|EMBL:CAL62256.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
Putative amidase n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G6W9_HERAR rbh
scnpilot_solids1_trim150_scaffold_2362_18
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16611..17948)
-----------------
DNA (1338bp)
protein (446aa)
Putative major facilitator family transporter n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G6X0_HERAR rbh
permease rbh
Putative major facilitator family transporter {ECO:0000313|EMBL:CAL62257.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
scnpilot_solids1_trim150_scaffold_2362_19
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18119..19045
-----------------
DNA (927bp)
protein (309aa)
Putative transcriptional regulator, LysR family n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G6X1_HERAR rbh
LysR family transcriptional regulator rbh
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:CAL62258.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
scnpilot_solids1_trim150_scaffold_2362_20
unknown

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comp(18956..19153)
-----------------
DNA (198bp)
protein (66aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2362_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19206..20507)
-----------------
DNA (1302bp)
protein (434aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V446_9BRAD rbh
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_2362_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20509..21483)
-----------------
DNA (975bp)
protein (325aa)
FAD linked oxidase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V447_9BRAD rbh
FAD linked oxidase domain protein {ECO:0000313|EMBL:EFI52727.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
glcE2; glycolate oxidase subunit GlcE rbh
Displaying 22 items

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