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scnpilot_solids1_trim150_scaffold_2408

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2408_1
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..269)
DNA (267bp) protein (89aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Sphingobium sp. AP49 RepID=J2WMK6_9SPHN
P-type conjugative transfer protein TrbJ {ECO:0000313|EMBL:EJK84238.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
conjugal transfer protein TrbJ
scnpilot_solids1_trim150_scaffold_2408_2
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(266..2755)
DNA (2490bp) protein (830aa)
Conjugal transfer protein TrbE n=1 Tax=Sphingobium baderi LL03 RepID=T0HUG1_9SPHN rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:EQB02935.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer ATPase TrbE
scnpilot_solids1_trim150_scaffold_2408_3
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2752..3033)
DNA (282bp) protein (94aa)
Conjugal transfer protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGS8_9SPHN
Conjugal transfer protein {ECO:0000313|EMBL:EQB02936.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
type IV secretory pathway, VirB3 family protein; K03198 type IV secretion system protein VirB3
scnpilot_solids1_trim150_scaffold_2408_4
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3030..3398)
DNA (369bp) protein (123aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingobium baderi LL03 RepID=T0GQI8_9SPHN
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EQB02937.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer protein TrbC
scnpilot_solids1_trim150_scaffold_2408_5
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3395..4381)
DNA (987bp) protein (329aa)
Conjugal transfer protein TrbB n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GX39_9SPHN rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EQB04503.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
scnpilot_solids1_trim150_scaffold_2408_6
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4610..5038)
DNA (429bp) protein (143aa)
CopG family transcripitonal regulator n=1 Tax=Sphingobium baderi LL03 RepID=T0GGT3_9SPHN
CopG family transcripitonal regulator {ECO:0000313|EMBL:EQB02941.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
helix-turn-helix domain-containing protein
scnpilot_solids1_trim150_scaffold_2408_7
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5048..7033)
DNA (1986bp) protein (662aa)
Conjugal transfer protein TraG n=1 Tax=Sphingobium baderi LL03 RepID=T0GQJ1_9SPHN rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:EQB02942.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
conjugal transfer coupling protein TraG
scnpilot_solids1_trim150_scaffold_2408_8
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7049..8527)
DNA (1479bp) protein (493aa)
Type VI secretion protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSK6_9SPHN
Type VI secretion protein {ECO:0000313|EMBL:EQB02943.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
Displaying 8 items

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