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scnpilot_solids1_trim150_scaffold_2430

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2430_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..671
DNA (669bp) protein (223aa)
Conjugal transfer ATPase TrbE {ECO:0000313|EMBL:EIK91451.1}; EC=3.6.1.15 {ECO:0000313|EMBL:EIK91451.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Conjugal transfer ATPase TrbE n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQG1_9BURK
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
scnpilot_solids1_trim150_scaffold_2430_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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668..1393
DNA (726bp) protein (242aa)
conjugal transfer protein TrbJ n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002F37B98 rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EWC39973.1}; TaxID=1218352 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri KOS6.;"
trbJ; conjugal transfer protein TrbJ rbh
scnpilot_solids1_trim150_scaffold_2430_3
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1406..1726
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RJG4_PSEAI
Lipoprotein {ECO:0000313|EMBL:BAP44842.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
putative lipoprotein
scnpilot_solids1_trim150_scaffold_2430_4
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1723..3108
DNA (1386bp) protein (462aa)
P-type conjugative transfer protein TrbL n=2 Tax=Gammaproteobacteria RepID=K1JKZ1_AERHY rbh
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KGM52054.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
trbL; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL rbh
scnpilot_solids1_trim150_scaffold_2430_5
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3121..3825
DNA (705bp) protein (235aa)
Conjugal transfer protein TrbF n=3 Tax=Proteobacteria RepID=M4WUI8_PSEDE rbh
conjugal transfer protein TrbF rbh
Uncharacterized protein {ECO:0000313|EMBL:EKB27232.1}; TaxID=1073377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila SSU.;"
scnpilot_solids1_trim150_scaffold_2430_6
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3822..4814
DNA (993bp) protein (331aa)
P-type conjugative transfer protein TrbG n=2 Tax=Proteobacteria RepID=K1JAD8_AERHY rbh
p-type conjugative transfer protein trbg {ECO:0000313|EMBL:BAP44845.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
P-type conjugative transfer protein TrbG rbh
scnpilot_solids1_trim150_scaffold_2430_7
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4817..6091
DNA (1275bp) protein (425aa)
Type IV secretion system protein VirB10 n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2XBY0_DELAC rbh
Conjugative transfer protein TrbI {ECO:0000313|EMBL:BAP44846.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
conjugation TrbI family protein rbh
scnpilot_solids1_trim150_scaffold_2430_8
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6088..6333
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA022 RepID=U8RJG8_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KIZ37571.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2430_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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6777..7049
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E26E5
competence protein ComEA; K02237 competence protein ComEA
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_2430_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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7211..7987
DNA (777bp) protein (259aa)
zinc/iron permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000363172F rbh
ZIP Zinc transporter rbh
ZIP Zinc transporter {ECO:0000313|EMBL:AAZ97718.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids1_trim150_scaffold_2430_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7919..8143)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CF555
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_2430_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8170..8478
DNA (309bp) protein (103aa)
hypothetical protein; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-]
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000255|HAMAP-Rule:MF_01865}; Short=S12 MTTase {ECO:0000255|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000255|HAMAP-Rule:MF_01865};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000255|HAMAP-Rule:MF_01865}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenop
ribosomal protein S12 methylthiotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003779D5F
Displaying 12 items

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