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scnpilot_solids1_trim150_scaffold_2897

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2897_1
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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49..2019
DNA (1971bp) protein (657aa)
conjugal transfer protein TraG n=1 Tax=Sphingobium xenophagum RepID=UPI0002F592E2
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:KGB59357.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
conjugal transfer coupling protein TraG
scnpilot_solids1_trim150_scaffold_2897_2
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2016..2435
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IC08_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA11503.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2897_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2450..2689)
DNA (240bp) protein (80aa)
Putative membrane protein {ECO:0000313|EMBL:AJA11504.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
scnpilot_solids1_trim150_scaffold_2897_4
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2886..3515)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9C3_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:AJA11505.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2897_5
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3518..4234)
DNA (717bp) protein (239aa)
Bll0863 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89W30_BRADU
Uncharacterized protein {ECO:0000313|EMBL:AJA11506.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2897_6
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4234..4650)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Mycobacterium avium subsp. hominissuis TH135 RepID=T2GVI1_MYCAV
Uncharacterized protein {ECO:0000313|EMBL:AJA11507.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
phenylacetic acid degradation-related protein
scnpilot_solids1_trim150_scaffold_2897_7
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4834..5064
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B558E1
Uncharacterized protein {ECO:0000313|EMBL:AJA11508.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
scnpilot_solids1_trim150_scaffold_2897_8
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5072..5968)
DNA (897bp) protein (299aa)
DNA repair protein RadC n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ77_SPHAL
DNA repair protein RadC {ECO:0000313|EMBL:AJA11509.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
DNA repair protein RadC
scnpilot_solids1_trim150_scaffold_2897_9
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6010..6483)
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0IDS2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB18755.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
scnpilot_solids1_trim150_scaffold_2897_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6525..6854)
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0H6R1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP70302.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2897_11
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6913..7380)
DNA (468bp) protein (156aa)
Transcriptional regulator, LuxR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ79_SPHAL
LuxR family transcriptional regulator {ECO:0000313|EMBL:AJA11512.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
LuxR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_2897_12
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7658..7789
DNA (132bp) protein (44aa)
Type IV secretion system protein VirB11 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGH1_9SPHN
Conjugal transfer protein TrbB {ECO:0000313|EMBL:AJA11513.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
type IV secretion system protein VirB11; K03196 type IV secretion system protein VirB11
Displaying 12 items

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