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scnpilot_solids1_trim150_scaffold_4838

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_4838_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1198
DNA (1197bp) protein (399aa)
pabB; para-aminobenzoate synthase, component I (EC:4.1.3.-); K01665 para-aminobenzoate synthetase component I [EC:2.6.1.85] id=12493003 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
pabB; para-aminobenzoate synthase, component I (EC:4.1.3.-); K01665 para-aminobenzoate synthetase component I [EC:2.6.1.85]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_4838_2
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1183..1764
DNA (582bp) protein (194aa)
aspartate/glutamate/uridylate kinase id=12493004 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Aspartate/glutamate/uridylate kinase {ECO:0000313|EMBL:EGV33367.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
aspartate/glutamate/uridylate kinase
scnpilot_solids1_trim150_scaffold_4838_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1778..2386
DNA (609bp) protein (203aa)
hypothetical protein id=12493005 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96226.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids1_trim150_scaffold_4838_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2373..2903
DNA (531bp) protein (177aa)
thioredoxin family protein id=12493006 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
thioredoxin family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_4838_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

2931..4301
DNA (1371bp) protein (457aa)
PLP-dependent enzyme, glutamate decarboxylase id=12493007 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
PLP-dependent enzyme, glutamate decarboxylase rbh
PLP-dependent enzyme, glutamate decarboxylase {ECO:0000313|EMBL:AGA24650.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
scnpilot_solids1_trim150_scaffold_4838_6
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

4549..5364
DNA (816bp) protein (272aa)
cyclic nucleotide-binding protein id=12493008 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Putative membrane protein {ECO:0000313|EMBL:AFL87070.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
scnpilot_solids1_trim150_scaffold_4838_7
CG_Delta_06, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5402..5671)
DNA (270bp) protein (90aa)
hypothetical protein id=12493009 bin=THIO_HI species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
conserved hypothetical protein; putative exported protein
Tax=CG_Delta_06
scnpilot_solids1_trim150_scaffold_4838_8
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5722..6300)
DNA (579bp) protein (193aa)
hypothetical protein id=12493010 bin=THIO_HI species=Methyloversatilis sp. NVD genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
scnpilot_solids1_trim150_scaffold_4838_9
unknown

Not on your lists

comp(6768..7250)
DNA (483bp) protein (161aa)
id=12493012 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria rbh
scnpilot_solids1_trim150_scaffold_4838_10
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7492..8028
DNA (537bp) protein (179aa)
two comoponent transcriptional regulator; K07662 two-component system, OmpR family, response regulator CpxR id=12493013 bin=THIO_HI species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
two comoponent transcriptional regulator; K07662 two-component system, OmpR family, response regulator CpxR
Tax=RBG_16_Gammaproteobacteria_62_13__curated
scnpilot_solids1_trim150_scaffold_4838_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8028..9440
DNA (1413bp) protein (471aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Signal transduction histidine kinase id=12493014 bin=THIO_HI species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_4838_12
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9442..10569
DNA (1128bp) protein (376aa)
acrA1; cation/multidrug efflux system, mebrane-fusion component AcrA; K07799 putative multidrug efflux transporter MdtA id=12493015 bin=THIO_HI species=Curvibacter lanceolatus genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
RND transporter MFP subunit {ECO:0000313|EMBL:AGW88962.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
secretion protein HlyD; K07799 putative multidrug efflux transporter MdtA
scnpilot_solids1_trim150_scaffold_4838_13
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10671..10934
DNA (264bp) protein (88aa)
hypothetical protein id=12493016 bin=THIO_HI species=Pseudomonas nitroreducens genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:ESQ84105.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_4838_14
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10931..14008
DNA (3078bp) protein (1026aa)
cation/multidrug efflux pump transmembrane protein; K07788 RND superfamily, multidrug transport protein MdtB id=12493017 bin=THIO_HI species=Herbaspirillum seropedicae genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Cation/multidrug efflux pump transmembrane protein {ECO:0000313|EMBL:EIJ46733.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
cation/multidrug efflux pump transmembrane protein; K07788 RND superfamily, multidrug transport protein MdtB rbh
scnpilot_solids1_trim150_scaffold_4838_15
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14005..17019
DNA (3015bp) protein (1005aa)
mdtC; multidrug efflux system, subunit c; K07789 RND superfamily, multidrug transport protein MdtC id=12493969 bin=THIO_HI species=blood disease bacterium R229 genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
mdtC; multidrug efflux system, subunit c; K07789 RND superfamily, multidrug transport protein MdtC rbh
Multidrug efflux system, subunit C {ECO:0000313|EMBL:CBJ35560.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
scnpilot_solids1_trim150_scaffold_4838_16
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17031..17996
DNA (966bp) protein (322aa)
outer membrane chanel lipoprotein transmembrane id=12493970 bin=THIO_HI species=Ralstonia solanacearum genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Type I secretion outer membrane protein {ECO:0000313|EMBL:EAP74811.1}; TaxID=342110 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum UW551.;"
agrC; rnd efflux system, outer membrane lipoprotein, nodt family
Displaying 16 items

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