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scnpilot_solids1_trim150_scaffold_188

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_188_1
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108..884)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI0003798810 rbh
Uncharacterized protein {ECO:0000313|EMBL:KER38333.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_188_2
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(913..1569)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Sphingobium indicum B90A RepID=I5B9P1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM66293.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_188_3
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1583..2230)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Sphingobium indicum B90A RepID=I5B9P2_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM66294.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_188_4
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2473..3849
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C0F5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPM64846.1}; TaxID=1104682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae pv. actinidiae ICMP 18804.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_188_5
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3846..5792
DNA (1947bp) protein (649aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000367ED44 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPM44380.1}; TaxID=1194422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae pv. actinidiae ICMP 19098.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_188_6
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5785..8529
DNA (2745bp) protein (915aa)
helicase domain-containing protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C268 rbh
Helicase domain-containing protein {ECO:0000313|EMBL:EPM80808.1}; TaxID=1104682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae pv. actinidiae ICMP 18804.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_188_7
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8552..8893)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B33586
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG77393.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids1_trim150_scaffold_188_8
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9039..9425
DNA (387bp) protein (129aa)
Transposase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L515_9SPHN
Transposase {ECO:0000313|EMBL:EIZ79459.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
transposase
scnpilot_solids1_trim150_scaffold_188_9
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9557..9985
DNA (429bp) protein (143aa)
Putative transposase C-terminus n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJ91_9SPHN
Putative transposase {ECO:0000313|EMBL:KFL49003.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
transposase
scnpilot_solids1_trim150_scaffold_188_10
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9957..10733)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002FA66BF rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG77393.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids1_trim150_scaffold_188_11
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10773..13946)
DNA (3174bp) protein (1058aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
putative DNA helicase (EC:3.6.1.-) rbh
hypothetical protein, partial n=1 Tax=Sphingobium chinhatense RepID=UPI000380C3B5 rbh
scnpilot_solids1_trim150_scaffold_188_12
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13939..16653)
DNA (2715bp) protein (905aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCM8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KER35074.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_188_13
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16712..17704)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S373_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KER35075.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_188_14
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17809..19884
DNA (2076bp) protein (692aa)
hypothetical protein, partial n=1 Tax=Sphingobium chinhatense RepID=UPI000366F26E rbh
Uncharacterized protein {ECO:0000313|EMBL:KER35076.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
ATPase AAA rbh
scnpilot_solids1_trim150_scaffold_188_15
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19906..20598)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI000364934E rbh
Uncharacterized protein {ECO:0000313|EMBL:EPR16410.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_188_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20647..20886)
DNA (240bp) protein (80aa)
Phage transcriptional regulator AlpA n=1 Tax=Sphingobium indicum B90A RepID=I5B9Q2_9SPHN
Phage transcriptional regulator AlpA {ECO:0000313|EMBL:KHS42942.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
phage transcriptional regulator AlpA; K07733 prophage regulatory protein
scnpilot_solids1_trim150_scaffold_188_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20932..21393)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6D0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS42941.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_188_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21744..22073
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6C9_NOVAD
hypothetical protein
Conjugative transfer protein traA {ECO:0000313|EMBL:GAO55785.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
scnpilot_solids1_trim150_scaffold_188_19
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22101..22388
DNA (288bp) protein (96aa)
conjugal transfer protein TraL n=1 Tax=Sphingobium chinhatense RepID=UPI0003601545
Conjugal transfer pilus assembly protein TraL {ECO:0000313|EMBL:KHS42939.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein; K12068 conjugal transfer pilus assembly protein TraL
scnpilot_solids1_trim150_scaffold_188_20
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22401..22973
DNA (573bp) protein (191aa)
conjugal transfer protein TraE n=1 Tax=Sphingobium chinhatense RepID=UPI000368D980 rbh
Conjugal transfer pilus assembly protein TraE {ECO:0000313|EMBL:EZP79939.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein; K12067 conjugal transfer pilus assembly protein TraE rbh
scnpilot_solids1_trim150_scaffold_188_21
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22973..23731
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Sphingobium indicum B90A RepID=I5B9Q7_9SPHN rbh
Conjugal transfer pilus assembly protein TraK {ECO:0000313|EMBL:EZP79940.1}; Flags: Precursor;; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein; K12066 conjugal transfer pilus assembly protein TraK rbh
scnpilot_solids1_trim150_scaffold_188_22
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23724..25064
DNA (1341bp) protein (447aa)
conjugal transfer protein TraB n=1 Tax=Sphingobium chinhatense RepID=UPI000366707F rbh
Conjugal transfer protein TraB {ECO:0000313|EMBL:EPR16090.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
TraB pilus assembly; K12065 conjugal transfer pilus assembly protein TraB rbh
scnpilot_solids1_trim150_scaffold_188_23
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25061..25963
DNA (903bp) protein (301aa)
hypothetical protein; K03981 thiol:disulfide interchange protein DsbC [EC:5.3.4.1] rbh
thiol:disulfide interchange protein DsbC n=1 Tax=Sphingobium chinhatense RepID=UPI00036AF56F rbh
Thiol:disulfide interchange protein DsbC {ECO:0000313|EMBL:EPR16089.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
scnpilot_solids1_trim150_scaffold_188_24
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25968..26780
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Sphingobium indicum B90A RepID=I5B9R0_9SPHN rbh
Conjugal transfer protein TraV {ECO:0000313|EMBL:KER34452.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein; K12064 conjugal transfer pilus assembly protein TraV rbh
scnpilot_solids1_trim150_scaffold_188_25
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26780..29323
DNA (2544bp) protein (848aa)
ATPase n=1 Tax=Sphingobium indicum B90A RepID=I5B9R1_9SPHN rbh
(4Fe-4S)-binding protein {ECO:0000313|EMBL:KER34453.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
ATPase; K12063 conjugal transfer ATP-binding protein TraC rbh
scnpilot_solids1_trim150_scaffold_188_26
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29352..29744
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI00037645B1
Uncharacterized protein {ECO:0000313|EMBL:KER34454.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_188_27
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29741..30148
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Sphingobium indicum B90A RepID=I5B9R3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KER34455.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_188_28
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30135..30371
DNA (237bp) protein (79aa)
Type IV secretory pathway protease TraF-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6B9_NOVAD
Conjugal transfer protein TraF {ECO:0000313|EMBL:KER34456.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
Type IV secretory pathway protease TraF-like; K12062 conjugal transfer pilin signal peptidase TrbI
scnpilot_solids1_trim150_scaffold_188_29
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30317..30658
DNA (342bp) protein (114aa)
Type IV secretory pathway protease TraF-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6B9_NOVAD
Type IV secretory pathway protease TraF-like; K12062 conjugal transfer pilin signal peptidase TrbI
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
scnpilot_solids1_trim150_scaffold_188_30
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30655..31302
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6B8_NOVAD rbh
Conjugal transfer protein TraW {ECO:0000313|EMBL:KER34457.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein; K12061 conjugal transfer pilus assembly protein TraW rbh
Displaying items 1-30 of 58 in total

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