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scnpilot_solids1_trim150_scaffold_399

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_399_1
unknown

Not on your lists

1..93
DNA (93bp) protein (31aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_399_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115..1008
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D8D51
putative replication initiator and transcription repressor protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_399_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1214..1852
DNA (639bp) protein (213aa)
ParA n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BC195
cobyrinic acid a,c-diamide synthase; K03496 chromosome partitioning protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_399_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1849..2094
DNA (246bp) protein (82aa)
parB partition protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E0639
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_399_5
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2091..2624
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0AB2
Transposase {ECO:0000313|EMBL:AJP47690.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_399_6
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2621..3145
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743BE1
Peptidase {ECO:0000313|EMBL:AJP47689.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
putative conjugal transfer TRAF transmembrane protein
scnpilot_solids1_trim150_scaffold_399_7
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3465..5423
DNA (1959bp) protein (653aa)
Type IV secretory pathway, VirD2 components (Relaxase) n=1 Tax=Ralstonia solanacearum FQY_4 RepID=M4UBN3_RALSL
Type IV secretory pathway, VirD2 components (Relaxase) {ECO:0000313|EMBL:AGH83629.1}; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
Type IV secretory pathway, VirD2 components (relaxase)
scnpilot_solids1_trim150_scaffold_399_8
unknown

Not on your lists

comp(5429..5656)
DNA (228bp) protein (76aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_399_9
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5918..7333)
DNA (1416bp) protein (472aa)
GntR family transcriptional regulator n=1 Tax=Burkholderia ubonensis RepID=UPI00016A500B rbh
Aminotransferase class I and II family protein {ECO:0000313|EMBL:AJX12014.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_399_10
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7515..8450
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5009 rbh
Phytanoyl-CoA dioxygenase family protein {ECO:0000313|EMBL:AJX13071.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_399_11
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8630..9637
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5008 rbh
Putative iopA {ECO:0000313|EMBL:AJX12147.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
Inducer of phenazine A
scnpilot_solids1_trim150_scaffold_399_12
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9806..11287
DNA (1482bp) protein (494aa)
MFS transporter n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5006 rbh
Sugar (And other) transporter family protein {ECO:0000313|EMBL:AJX13682.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
major facilitator superfamily protein; K08166 MFS transporter, DHA2 family, methylenomycin A resistance protein rbh
scnpilot_solids1_trim150_scaffold_399_13
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11324..12826
DNA (1503bp) protein (501aa)
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5005 rbh
KY49.ctg7180000000025_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP14750.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
IopB
scnpilot_solids1_trim150_scaffold_399_14
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12775..13452
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5005
Iron-containing redox enzyme family protein {ECO:0000313|EMBL:AJX14207.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_399_15
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13445..15265
DNA (1821bp) protein (607aa)
carbamoyltransferase; K00612 carbamoyltransferase [EC:2.1.3.-] rbh
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5004 rbh
KY49.ctg7180000000025_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP13584.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
scnpilot_solids1_trim150_scaffold_399_16
unknown

Not on your lists

15285..15563
DNA (279bp) protein (93aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_399_17
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15560..17242
DNA (1683bp) protein (561aa)
tannase n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5003 rbh
KY49.ctg7180000000025_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP14361.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
tannase rbh
scnpilot_solids1_trim150_scaffold_399_18
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17307..18884
DNA (1578bp) protein (526aa)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
ilvA; threonine ammonia-lyase, biosynthetic (EC:4.3.1.19) rbh
Threonine ammonia-lyase, biosynthetic n=15 Tax=Burkholderia pseudomallei RepID=A8E9J0_BURPE rbh
scnpilot_solids1_trim150_scaffold_399_19
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19150..20055
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUZ6_POLNA
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM39474.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_solids1_trim150_scaffold_399_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20097..20339
DNA (243bp) protein (81aa)
Lipoprotein n=1 Tax=mine drainage metagenome RepID=T1CDB9_9ZZZZ
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_399_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20630..22621
DNA (1992bp) protein (664aa)
conjugal transfer protein TraG n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C7ECF rbh
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_399_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22618..23106
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F80A4
CopG domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_399_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23103..24119
DNA (1017bp) protein (339aa)
conjugal transfer protein TrbB n=1 Tax=Thiobacillus denitrificans RepID=UPI000374E989 rbh
type II secretion system protein E; K03196 type IV secretion system protein VirB11
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_399_24
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24116..24448
DNA (333bp) protein (111aa)
conjugal transfer protein TrbC n=1 Tax=Thiobacillus denitrificans RepID=UPI0003665B36
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AJP47676.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
scnpilot_solids1_trim150_scaffold_399_25
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24445..24744
DNA (300bp) protein (100aa)
conjugal transfer protein TrbD n=1 Tax=Thiobacillus denitrificans RepID=UPI00036ED53C
trbD1; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
Conjugal transfer protein TrbD {ECO:0000313|EMBL:CAP42551.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_solids1_trim150_scaffold_399_26
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24755..27193
DNA (2439bp) protein (813aa)
conjugal transfer protein TrbE n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D4CA rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:AJP47674.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
trbE1; conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
scnpilot_solids1_trim150_scaffold_399_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27190..27918
DNA (729bp) protein (243aa)
conjugal transfer protein TrbJ n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0BFB rbh
conjugal transfer protein TrbJ rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_399_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27928..28191
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000370D5A2
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_399_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28195..29556
DNA (1362bp) protein (454aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003826C00
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_399_30
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29583..30290
DNA (708bp) protein (236aa)
conjugal transfer protein TrbF n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D7A3
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AJP47671.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer protein TrbF
Displaying items 1-30 of 42 in total

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