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scnpilot_solids1_trim150_scaffold_445

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_445_1
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

217..1521
DNA (1305bp) protein (435aa)
Conjugal transfer protein TraB n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JSU8_9RHIZ rbh
Conjugal transfer protein TraB {ECO:0000313|EMBL:KGF70628.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
traB; conjugal transfer protein TraB rbh
scnpilot_solids1_trim150_scaffold_445_2
unknown

Not on your lists

comp(1496..1759)
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_445_3
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1820..2263)
DNA (444bp) protein (148aa)
thioesterase n=1 Tax=Comamonas sp. B-9 RepID=UPI00039581AE
Putative thioesterase {ECO:0000313|EMBL:EJE50409.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
thioesterase superfamily protein
scnpilot_solids1_trim150_scaffold_445_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2332..3438
DNA (1107bp) protein (369aa)
FAD dependent oxidoreductase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VF16_SPHWW rbh
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KHK89118.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
FAD dependent oxidoreductase rbh
scnpilot_solids1_trim150_scaffold_445_5
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3435..5021
DNA (1587bp) protein (529aa)
betA; choline dehydrogenase, a flavoprotein (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1] rbh
Choline dehydrogenase, a flavoprotein alcohol dehydrogenase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S0X3_9BRAD rbh
Choline dehydrogenase {ECO:0000313|EMBL:KHK89117.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
scnpilot_solids1_trim150_scaffold_445_6
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5048..6496
DNA (1449bp) protein (483aa)
NAD-dependent aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003620852
Aldehyde dehydrogenase {ECO:0000313|EMBL:KHK89116.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
scnpilot_solids1_trim150_scaffold_445_7
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6531..7565)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZFX3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIT70809.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
LacI family transcriptional regulator
scnpilot_solids1_trim150_scaffold_445_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7738..8523)
DNA (786bp) protein (262aa)
Putative 3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AMA5_AZOBR
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:AIB11406.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative 3-oxoacyl-(acyl-carrier-protein) reductase
scnpilot_solids1_trim150_scaffold_445_9
unknown

Not on your lists

8723..8851
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_445_10
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8922..9788)
DNA (867bp) protein (289aa)
Epoxide hydrolase n=2 Tax=Actinomycetales RepID=I1Y9H2_9MICC
Uncharacterized protein {ECO:0000313|EMBL:KEJ93887.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
hydrolase or acyltransferase
scnpilot_solids1_trim150_scaffold_445_11
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9760..10233)
DNA (474bp) protein (158aa)
UPI0003C7DDF4 related cluster n=1 Tax=unknown RepID=UPI0003C7DDF4
Uncharacterized protein {ECO:0000313|EMBL:KEJ93888.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
monoamine oxidase regulatory protein, putative
scnpilot_solids1_trim150_scaffold_445_12
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10271..11809)
DNA (1539bp) protein (513aa)
UPI0003C7F239 related cluster n=1 Tax=unknown RepID=UPI0003C7F239 rbh
Uncharacterized protein {ECO:0000313|EMBL:KEJ93889.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
Ibuprofen CoA ligase rbh
scnpilot_solids1_trim150_scaffold_445_13
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11964..12812)
DNA (849bp) protein (283aa)
Phenylacetate-responsive transcriptional repressor n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z5P0_AZOL4
Uncharacterized protein {ECO:0000313|EMBL:KEJ93890.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
paaX; phenylacetate-responsive transcriptional repressor; K02616 phenylacetic acid degradation operon negative regulatory protein
scnpilot_solids1_trim150_scaffold_445_14
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13165..13953
DNA (789bp) protein (263aa)
enoyl-CoA hydratase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
Enoyl-CoA hydratase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GXL7_9PROT
Enoyl-CoA hydratase {ECO:0000313|EMBL:KEJ93891.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
scnpilot_solids1_trim150_scaffold_445_15
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13950..14408
DNA (459bp) protein (153aa)
phenylacetic acid degradation protein PaaD; K02614 acyl-CoA thioesterase [EC:3.1.2.-]
Phenylacetic acid degradation protein PaaD n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V626_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEJ93892.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
scnpilot_solids1_trim150_scaffold_445_16
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14474..15622
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003630F3D
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEJ93893.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_445_17
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15714..16586
DNA (873bp) protein (291aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07SX8_RHOP5 rbh
ABC transporter permease {ECO:0000313|EMBL:KEJ93894.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_445_18
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16573..17535
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036B0B63 rbh
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KEJ93895.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_445_19
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17528..18307
DNA (780bp) protein (260aa)
High-affinity branched-chain amino acid transport ATP-binding protein BraF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6J1_9RHIZ rbh
Leucine/isoleucine/valine transporter ATP-binding subunit {ECO:0000313|EMBL:KEJ93896.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
scnpilot_solids1_trim150_scaffold_445_20
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18300..19007
DNA (708bp) protein (236aa)
High-affinity branched-chain amino acid transport, ATP-binding protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XXS0_PARAH
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEJ93897.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
high-affinity branched-chain amino acid transport, ATP-binding protein
scnpilot_solids1_trim150_scaffold_445_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

19140..20327
DNA (1188bp) protein (396aa)
Probable thiolase id=2937759 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
acetyl-CoA acetyltransferase rbh
Tax=GWC2_Rokubacteria_70_16_curated
scnpilot_solids1_trim150_scaffold_445_22
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20435..21418
DNA (984bp) protein (328aa)
paaA; phenylacetate-CoA oxygenase subunit PaaA; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
Phenylacetate-CoA oxygenase subunit PaaA n=1 Tax=Nitratireductor indicus C115 RepID=K2P877_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEJ93898.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
scnpilot_solids1_trim150_scaffold_445_23
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21463..21756
DNA (294bp) protein (98aa)
Putative phenylacetic acid degradation PaaH n=1 Tax=uncultured bacterium CBNPD1 BAC clone 67 RepID=B1N6F8_9BACT
Phenylacetate-CoA oxygenase {ECO:0000313|EMBL:KEJ93899.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
paaB; phenylacetic acid degradation protein; K02610 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
scnpilot_solids1_trim150_scaffold_445_24
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21756..22517
DNA (762bp) protein (254aa)
paaC; phenylacetic acid degradation protein paaC; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
Phenylacetic acid degradation protein paaC n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EFQ0_BRASB
Phenylacetic acid degradation protein {ECO:0000313|EMBL:KEJ93900.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
scnpilot_solids1_trim150_scaffold_445_25
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22511..23026
DNA (516bp) protein (172aa)
Phenylacetic acid degradation protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D480_BRAJP
Phenylacetate-CoA oxygenase {ECO:0000313|EMBL:KEJ93901.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
phenylacetic acid degradation protein; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
scnpilot_solids1_trim150_scaffold_445_26
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23123..24211
DNA (1089bp) protein (363aa)
ferredoxin n=1 Tax=Amorphus coralli RepID=UPI000381CD2E rbh
Uncharacterized protein {ECO:0000313|EMBL:KEJ93902.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
phenylacetate-CoA oxygenase/reductase subunit PaaK; K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE rbh
scnpilot_solids1_trim150_scaffold_445_27
Planktomarina temperata, Planktomarina, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24274..26379
DNA (2106bp) protein (702aa)
Fatty acid oxidation complex alpha subunit FadJ {ECO:0000313|EMBL:AII88079.1}; EC=1.1.1.35 {ECO:0000313|EMBL:AII88079.1};; EC=4.2.1.17 {ECO:0000313|EMBL:AII88079.1};; EC=5.1.2.3 {ECO:0000313|EMBL:AII88079.1};; TaxID=666509 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;"
NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2KA94_9BURK
scnpilot_solids1_trim150_scaffold_445_28
Mesorhizobium tianshanense, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26626..27357
DNA (732bp) protein (244aa)
Quorum sensing regulator n=1 Tax=Mesorhizobium tianshanense RepID=B5A461_9RHIZ
Quorum sensing regulator {ECO:0000313|EMBL:ACF28617.1}; TaxID=39844 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium tianshanense.;"
LuxR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_445_29
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27441..28112
DNA (672bp) protein (224aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
traI; acyl-homoserine-lactone synthase TraI (EC:2.3.1.184)
Autoinducer synthesis protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSR3_9RHIZ rbh
scnpilot_solids1_trim150_scaffold_445_30
unknown

Not on your lists

28413..28724
DNA (312bp) protein (104aa)

This feature has no annotations

Displaying items 1-30 of 48 in total

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