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scnpilot_solids1_trim150_scaffold_496

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_496_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..132)
DNA (132bp) protein (44aa)
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS id=12494893 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_496_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(198..1445)
DNA (1248bp) protein (416aa)
integrase n=1 Tax=Acidovorax radicis RepID=UPI00023777EE rbh
integrase family protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_496_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1899..2102)
DNA (204bp) protein (68aa)
Putative phage excisionase n=1 Tax=Pseudomonas putida (strain GB-1) RepID=B0KSD5_PSEPG
putative phage excisionase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_496_4

Not on your lists

comp(2301..2564)
DNA (264bp) protein (88aa)
conjugal transfer protein id=12498575 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:CBH97701.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_496_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2561..3835)
DNA (1275bp) protein (425aa)
trbI; Conjugative transfer protein TrbI; K03195 type IV secretion system protein VirB10 id=12498576 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria rbh
trbI; Conjugative transfer protein TrbI; K03195 type IV secretion system protein VirB10
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_496_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3838..4851)
DNA (1014bp) protein (338aa)
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9 id=12498577 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_496_7
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4848..5555)
DNA (708bp) protein (236aa)
conjugal transfer protein TrbF n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D7A3
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AJP47671.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer protein TrbF
scnpilot_solids1_trim150_scaffold_496_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5582..6943)
DNA (1362bp) protein (454aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003826C00
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_496_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6947..7204)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000370D5A2
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_496_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7211..7939)
DNA (729bp) protein (243aa)
conjugal transfer protein TrbJ n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0BFB
conjugal transfer protein TrbJ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_496_11
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7936..10365)
DNA (2430bp) protein (810aa)
conjugal transfer protein TrbE n=1 Tax=Thiobacillus denitrificans RepID=UPI000365D4CA
Conjugal transfer protein TrbE {ECO:0000313|EMBL:AJP47674.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
scnpilot_solids1_trim150_scaffold_496_12
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10376..10648)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA010 RepID=U9MGR6_PSEAI
Conjugal transfer protein TrbD {ECO:0000313|EMBL:AJP47675.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer protein; K03198 type IV secretion system protein VirB3
scnpilot_solids1_trim150_scaffold_496_13
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10645..10977)
DNA (333bp) protein (111aa)
conjugal transfer protein TrbC n=1 Tax=Thiobacillus denitrificans RepID=UPI0003665B36
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AJP47676.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
scnpilot_solids1_trim150_scaffold_496_14
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10974..11990)
DNA (1017bp) protein (339aa)
conjugal transfer protein TrbB n=1 Tax=Thiobacillus denitrificans RepID=UPI000374E989
Conjugal transfer protein TrbB {ECO:0000313|EMBL:AJP47677.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11
scnpilot_solids1_trim150_scaffold_496_15
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11987..12469)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F80A4
CopG family transcriptional regulator {ECO:0000313|EMBL:AJP47678.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
CopG/DNA-binding domain-containing protein
scnpilot_solids1_trim150_scaffold_496_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12466..14457)
DNA (1992bp) protein (664aa)
conjugal transfer protein TraG n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C7ECF
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_496_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14749..14994)
DNA (246bp) protein (82aa)
Lipoprotein n=1 Tax=mine drainage metagenome RepID=T1CDB9_9ZZZZ
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_496_18
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15039..15944)
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUZ6_POLNA
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM39474.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_solids1_trim150_scaffold_496_19
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16018..16260)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW57_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV37867.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_solids1_trim150_scaffold_496_20
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16493..17119)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Thauera aminoaromatica S2 RepID=N6ZA65_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO89079.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_496_21
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17139..17876)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Thauera aminoaromatica S2 RepID=N6Z3V4_9RHOO rbh
Uncharacterized protein {ECO:0000313|EMBL:ENO89078.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_496_22
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17869..19125)
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW57_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV37867.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_solids1_trim150_scaffold_496_23
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19122..19424)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW58_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV37868.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_solids1_trim150_scaffold_496_24
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19417..22500)
DNA (3084bp) protein (1028aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW59_ACCPU
Cation efflux system protein CzcA {ECO:0000313|EMBL:KFB74620.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
heavy metal efflux pump, CzcA family; K07239 heavy-metal exporter, HME family
scnpilot_solids1_trim150_scaffold_496_25
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22500..23624)
DNA (1125bp) protein (375aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW60_ACCPU
efflux transporter RND family, MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACV37870.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_solids1_trim150_scaffold_496_26
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23729..24073)
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:KFB74622.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
scnpilot_solids1_trim150_scaffold_496_27
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(24109..24387)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0JVJ0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCG91259.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein; K07807 hypothetical protein NreA
scnpilot_solids1_trim150_scaffold_496_28
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24541..26487
DNA (1947bp) protein (649aa)
Heavy metal translocating P-type ATPase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK06_9BURK rbh
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EHR70978.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
heavy metal translocating P-type ATPase
scnpilot_solids1_trim150_scaffold_496_29
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26573..28561)
DNA (1989bp) protein (663aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUX8_POLNA
Type VI secretion protein {ECO:0000313|EMBL:AJP47688.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_496_30
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28806..29330)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743BE1
Peptidase {ECO:0000313|EMBL:AJP47689.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
putative conjugal transfer TRAF transmembrane protein
Displaying items 1-30 of 54 in total

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