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scnpilot_solids1_trim150_scaffold_557

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_557_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..2359
DNA (2358bp) protein (786aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WG70_9GAMM
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:EIL98461.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Lipopolysaccharide biosynthesis protein
scnpilot_solids1_trim150_scaffold_557_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2615..3361
DNA (747bp) protein (249aa)
Electron transfer flavoprotein subunit beta n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTZ1_9GAMM
electron transfer flavoprotein, beta subunit
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:EIL90682.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_557_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3423..4367
DNA (945bp) protein (315aa)
Electron transfer flavoprotein alpha subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTZ0_9GAMM
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:EIL90681.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
electron transfer flavoprotein, alpha subunit
scnpilot_solids1_trim150_scaffold_557_trna_1
unknown

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4521..4591
DNA (71bp)
transferRNA Gly
scnpilot_solids1_trim150_scaffold_557_4
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5078..6358
DNA (1281bp) protein (427aa)
isochorismate synthase; K02361 isochorismate synthase [EC:5.4.4.2] rbh
hypothetical protein n=1 Tax=Oceanimonas smirnovii RepID=UPI00038286B5 rbh
Isochorismate synthase {ECO:0000313|EMBL:EZP46899.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
scnpilot_solids1_trim150_scaffold_557_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6349..6984
DNA (636bp) protein (212aa)
entB; isochorismatase (EC:3.3.2.1); K01252 bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1]
2,3-dihydro-2,3-dihydroxybenzoate synthetase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000316E414
Uncharacterized protein {ECO:0000313|EMBL:AHY58927.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_557_6
unknown

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6981..7100
DNA (120bp) protein (40aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_557_7
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7091..7861
DNA (771bp) protein (257aa)
Vibriobactin-specific 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase {ECO:0000313|EMBL:EED39187.1}; EC=1.3.1.28 {ECO:0000313|EMBL:EED39187.1};; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
short-chain dehydrogenase/reductase SDR; K00216 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28]
Vibriobactin-specific 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L5N8_9GAMM rbh
scnpilot_solids1_trim150_scaffold_557_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7946..9115
DNA (1170bp) protein (390aa)
Tat pathway signal sequence domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZV82_9PROT rbh
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EHM03143.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_557_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9112..10299
DNA (1188bp) protein (396aa)
peptidase M20D, amidohydrolase; K01451 hippurate hydrolase [EC:3.5.1.32]
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00037C69D8
Peptidase M20D, amidohydrolase {ECO:0000313|EMBL:CDM23382.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
scnpilot_solids1_trim150_scaffold_557_10
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10309..11385
DNA (1077bp) protein (359aa)
FecCD-family membrane transport protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRC8_PUSST
FecCD-family membrane transport protein; K02015 iron complex transport system permease protein
FecCD-family membrane transport protein {ECO:0000313|EMBL:AEC19487.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_solids1_trim150_scaffold_557_11
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11389..12183
DNA (795bp) protein (265aa)
ABC transport ATP-binding subunit; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] rbh
ABC transporter, ATP-binding protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW51_9BURK
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFV95534.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
scnpilot_solids1_trim150_scaffold_557_12
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12233..13396
DNA (1164bp) protein (388aa)
Periplasmic binding protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRC6_PUSST rbh
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein rbh
Periplasmic binding protein {ECO:0000313|EMBL:AEC19485.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_solids1_trim150_scaffold_557_13
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13393..14214
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRC5_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEC19484.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_solids1_trim150_scaffold_557_14
unknown

Not on your lists

14211..14996
DNA (786bp) protein (262aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_557_15
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15079..16827
DNA (1749bp) protein (583aa)
siderophore specific 2,3-dihydroxybenzoate-AMP ligase; K02363 2,3-dihydroxybenzoate-AMP ligase [EC:2.7.7.58]
Putative siderophore specific 2,3-dihydroxybenzoate-AMP ligase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GRC4_PUSST
Putative siderophore specific 2,3-dihydroxybenzoate-AMP ligase {ECO:0000313|EMBL:AEC19483.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_solids1_trim150_scaffold_557_16
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16824..17063
DNA (240bp) protein (80aa)
Isochorismatase n=3 Tax=Alcaligenes RepID=J0B7T7_ALCFA
Phosphopantetheine-binding protein {ECO:0000313|EMBL:ERI33409.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
isochorismatase
scnpilot_solids1_trim150_scaffold_557_17
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17111..21121
DNA (4011bp) protein (1337aa)
enterobactin synthase subunit F; K02364 enterobactin synthetase component F [EC:2.7.7.-]
AMP-binding enzyme n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW55_9BURK
AMP-binding enzyme {ECO:0000313|EMBL:EFV95538.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
scnpilot_solids1_trim150_scaffold_557_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21324..22250
DNA (927bp) protein (309aa)
Ribosomal protein S6 modification protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSY1_9GAMM
alpha-L-glutamate ligase, RimK family
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_557_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22331..23017
DNA (687bp) protein (229aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WVS9_9GAMM
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_557_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23001..24284
DNA (1284bp) protein (428aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVS8_9GAMM
signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_557_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24519..25436)
DNA (918bp) protein (306aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVC5_9GAMM
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:EIL91166.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_557_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26366..26944)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHD6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90370.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_557_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27106..27930)
DNA (825bp) protein (275aa)
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Methylenetetrahydrofolate reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVS5_9GAMM
scnpilot_solids1_trim150_scaffold_557_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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28184..28624
DNA (441bp) protein (147aa)
TrkA-C domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W076_9GAMM
TrkA-C domain-containing protein {ECO:0000313|EMBL:EIL92867.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
di-/tricarboxylate transporter
Displaying 25 items

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