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scnpilot_solids1_trim150_scaffold_587

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_587_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..760)
DNA (759bp) protein (253aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W427_9GAMM
scnpilot_solids1_trim150_scaffold_587_2
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

839..1420
DNA (582bp) protein (194aa)
Glycine cleavage system transcriptional repressor n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIU6_9GAMM
Glycine cleavage system regulatory protein {ECO:0000313|EMBL:KJV37020.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
glycine cleavage system regulatory protein
scnpilot_solids1_trim150_scaffold_587_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1472..1933
DNA (462bp) protein (154aa)
Peroxiredoxin n=1 Tax=Rhodanobacter denitrificans RepID=I4WYC5_9GAMM
Peroxiredoxin
Peroxiredoxin {ECO:0000313|EMBL:AGG89683.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_587_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2017..3402
DNA (1386bp) protein (462aa)
PhoH family protein n=1 Tax=Dyella japonica RepID=UPI0002F25875
Phosphate starvation protein PhoH {ECO:0000313|EMBL:AHX12608.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
PhoH family protein
scnpilot_solids1_trim150_scaffold_587_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3584..4396
DNA (813bp) protein (271aa)
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EIL87133.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EIL87133.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7); K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIU2_9GAMM rbh
scnpilot_solids1_trim150_scaffold_587_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4413..6086)
DNA (1674bp) protein (558aa)
Amidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNL8_9GAMM
amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:AGG88163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_587_trna_1
unknown

Not on your lists

6237..6324
DNA (88bp)
transferRNA Ser
scnpilot_solids1_trim150_scaffold_587_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6626..6982
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHV2_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97781.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids1_trim150_scaffold_587_8
unknown

Not on your lists

6979..7842
DNA (864bp) protein (288aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_587_9
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7977..8456)
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus sp. GGI-221 RepID=F8XVY0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGQ63873.1}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_587_10
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8468..8920)
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus sp. GGI-221 RepID=F8XVY0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGQ63873.1}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
scnpilot_solids1_trim150_scaffold_587_11
unknown

Not on your lists

9259..9783
DNA (525bp) protein (175aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_587_12
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10504..13596
DNA (3093bp) protein (1031aa)
type III restriction enzyme, res subunit; K01156 type III restriction enzyme [EC:3.1.21.5]
Type III restriction enzyme, res subunit n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I0R5_DESAP
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
scnpilot_solids1_trim150_scaffold_587_13
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13691..14782
DNA (1092bp) protein (364aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QBT5_ACIAP rbh
filamentation induced by cAMP protein fic rbh
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:ADX48551.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_solids1_trim150_scaffold_587_14
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14784..17765
DNA (2982bp) protein (994aa)
DNA methylase N-4/N-6 domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2I4_9GAMM
DNA methylase {ECO:0000313|EMBL:KAK48175.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
putative DNA methylase
scnpilot_solids1_trim150_scaffold_587_15
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17787..19592
DNA (1806bp) protein (602aa)
UPI0003CE85D7 related cluster n=1 Tax=unknown RepID=UPI0003CE85D7 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESX84789.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC412B00.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_587_16
unknown

Not on your lists

19602..19808
DNA (207bp) protein (69aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_587_17
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19808..22933
DNA (3126bp) protein (1042aa)
Helicase n=1 Tax=Thauera sp. 28 RepID=N6ZER6_9RHOO rbh
helicase rbh
Helicase domain protein {ECO:0000313|EMBL:ACK53080.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
scnpilot_solids1_trim150_scaffold_587_18
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22964..24802
DNA (1839bp) protein (613aa)
Uncharacterized protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZMN5_THASP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACK53079.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
scnpilot_solids1_trim150_scaffold_587_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24808..27015
DNA (2208bp) protein (736aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
UvrD/REP helicase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJP9_9GAMM
DNA/RNA helicase
scnpilot_solids1_trim150_scaffold_587_20
unknown

Not on your lists

comp(27374..27643)
DNA (270bp) protein (90aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_587_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27887..28237)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WST2_9GAMM
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGG87790.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_587_22
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28326..28850)
DNA (525bp) protein (175aa)
Prophage CP4-57 regulatory n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ47_9GAMM
prophage CP4-57 regulatory
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids1_trim150_scaffold_587_23
Leptospirillum sp. Group IV, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(29279..30322)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Leptospirillum sp. Group IV 'UBA BS' RepID=T0XYT0_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EQD24847.1}; TaxID=1260983 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum sp. Group IV 'UBA BS'.;"
integrase family protein rbh
scnpilot_solids1_trim150_scaffold_587_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30713..32206)
DNA (1494bp) protein (498aa)
Lytic murein transglycosylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VM01_9GAMM
Lytic murein transglycosylase {ECO:0000313|EMBL:EIL88242.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
soluble lytic murein transglycosylase-like protein
scnpilot_solids1_trim150_scaffold_587_25
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32472..32975
DNA (504bp) protein (168aa)
Transcription elongation factor GreB n=1 Tax=Rhodanobacter sp. 115 RepID=I4VLZ9_9GAMM
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcription elongation factor GreB
scnpilot_solids1_trim150_scaffold_587_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32997..33809)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLD5_9GAMM
Protein of unknown function (DUF3025)
Uncharacterized protein {ECO:0000313|EMBL:AGG88482.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_587_27
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33816..35171)
DNA (1356bp) protein (452aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1543381 species="Bacteria; Pr
ribosomal protein S12 methylthiotransferase n=1 Tax=Dyella japonica RepID=UPI0002F0FC79
ribosomal protein S12 methylthiotransferase RimO
scnpilot_solids1_trim150_scaffold_587_28
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35298..35975
DNA (678bp) protein (226aa)
carboxymethylenebutenolidase n=1 Tax=Dyella japonica RepID=UPI0002F133D5
Carboxymethylenebutenolidase {ECO:0000313|EMBL:AIF48581.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
dienelactone hydrolase-like enzyme
scnpilot_solids1_trim150_scaffold_587_29
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35972..36391
DNA (420bp) protein (140aa)
HIT family hydrolase, diadenosine tetraphosphate hydrolase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L6H9_FRAAD
HIT family hydrolase, diadenosine tetraphosphate hydrolase
HIT family hydrolase, diadenosine tetraphosphate hydrolase {ECO:0000313|EMBL:AFC85968.1}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
Displaying items 1-30 of 33 in total

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