ggKbase home page

scnpilot_solids1_trim150_scaffold_640

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_640_1
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1558
DNA (1557bp) protein (519aa)
transporter n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225EA81 rbh
Permease family protein {ECO:0000313|EMBL:EZP51116.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_640_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1792..2001)
DNA (210bp) protein (70aa)
Lysine/ornithine decarboxylase {ECO:0000313|EMBL:EGF96637.1}; EC=4.1.1.18 {ECO:0000313|EMBL:EGF96637.1};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
Orn/DAP/Arg decarboxylase 2; K01581 ornithine decarboxylase [EC:4.1.1.17]
Lysine/ornithine decarboxylase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QVK8_BREDI
scnpilot_solids1_trim150_scaffold_640_3
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2057..2965)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI000367ACEB rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ81295.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_640_4
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3413..4585
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI00036B8A47 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE52721.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_640_5
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4894..5379
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WE51_9SPHN
Protein-disulfide isomerase {ECO:0000313|EMBL:KEO92339.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
protein disulfide isomerase
scnpilot_solids1_trim150_scaffold_640_6
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5425..7593)
DNA (2169bp) protein (723aa)
prolyl oligopeptidase (EC:3.4.21.26); K01322 prolyl oligopeptidase [EC:3.4.21.26]
Prolyl endopeptidase n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UG48_9RHOB
Prolyl endopeptidase {ECO:0000313|EMBL:EAP89769.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
scnpilot_solids1_trim150_scaffold_640_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7607..9406)
DNA (1800bp) protein (600aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QL60_BREDI rbh
Uncharacterized protein {ECO:0000313|EMBL:EKY28287.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_640_8

Not on your lists

comp(9522..12413)
DNA (2892bp) protein (964aa)
TonB-dependent Receptor Plug domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WXD9_9SPHN rbh
TonB-dependent Receptor Plug domain protein {ECO:0000313|EMBL:AHN97635.1}; TaxID=1447240 species="Bacteria; environmental samples.;" source="uncultured bacterium lac16.;"
TonB-dependent receptor rbh
scnpilot_solids1_trim150_scaffold_640_9
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12710..13330
DNA (621bp) protein (207aa)
Transcriptional regulator, XRE family n=1 Tax=Azospirillum amazonense Y2 RepID=G1XX10_9PROT
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EGY02199.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
XRE family transcriptional regulator
scnpilot_solids1_trim150_scaffold_640_10
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13519..14670)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00037BDC8A rbh
NADH:flavin oxidoreductase {ECO:0000313|EMBL:KGF78699.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
NADH:flavin oxidoreductase/NADH oxidase family protein 1 rbh
scnpilot_solids1_trim150_scaffold_640_11
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14667..15059)
DNA (393bp) protein (131aa)
Endoribonuclease L-PSP n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KL31_METEX
Endoribonuclease L-PSP {ECO:0000313|EMBL:EHP91774.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
translational regulator; K07567 TdcF protein
scnpilot_solids1_trim150_scaffold_640_12
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15331..16125
DNA (795bp) protein (265aa)
LysR family transcriptional regulator, glycine cleavage system transcriptional activator n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2Y2M6_DELAC rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KGD96058.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
LysR family transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_640_13
unknown

Not on your lists

16276..16524
DNA (249bp) protein (83aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_640_14
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16404..17039)
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBQ6_9CAUL
Putative uncharacterized protein {ECO:0000313|EMBL:EDX80458.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_640_15
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17029..17583)
DNA (555bp) protein (185aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBQ5_9CAUL rbh
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
scnpilot_solids1_trim150_scaffold_640_16
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17724..18017
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBQ4_9CAUL
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
scnpilot_solids1_trim150_scaffold_640_17
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18017..18886
DNA (870bp) protein (290aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBQ3_9CAUL rbh
hypothetical protein; K09930 hypothetical protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
scnpilot_solids1_trim150_scaffold_640_18
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18883..19647
DNA (765bp) protein (255aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBQ2_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:KDP95800.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_640_19
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19644..20072
DNA (429bp) protein (143aa)
DoxX subfamily, putative n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBQ1_9CAUL
DoxX family protein; K15977 putative oxidoreductase
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
scnpilot_solids1_trim150_scaffold_640_20
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20194..20820
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QH95_BRESC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL01061.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
scnpilot_solids1_trim150_scaffold_640_21
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20817..22043
DNA (1227bp) protein (409aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QH96_BRESC rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADL01062.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
scnpilot_solids1_trim150_scaffold_640_22
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22030..22986
DNA (957bp) protein (319aa)
ATPase AAA; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
ATPase associated with various cellular activities AAA_3 n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QH97_BRESC rbh
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:ADL01063.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
scnpilot_solids1_trim150_scaffold_640_23
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22983..24299
DNA (1317bp) protein (439aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QH98_BRESC rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADL01064.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
scnpilot_solids1_trim150_scaffold_640_24
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24296..25300
DNA (1005bp) protein (335aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QH99_BRESC rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADL01065.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
scnpilot_solids1_trim150_scaffold_640_25
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25290..25622
DNA (333bp) protein (111aa)
RDD domain containing protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QHA0_BRESC
RDD domain containing protein
RDD domain containing protein {ECO:0000313|EMBL:ADL01066.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
Displaying 25 items

View Taxonomy