ggKbase home page

scnpilot_solids1_trim150_scaffold_706

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_706_1
unknown

Not on your lists

comp(2..166)
DNA (165bp) protein (55aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_706_2
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(198..938)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7P7_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KDA04531.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
scnpilot_solids1_trim150_scaffold_706_3
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(957..1472)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349F2D6
Uncharacterized protein {ECO:0000313|EMBL:KDA04532.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
scnpilot_solids1_trim150_scaffold_706_4
unknown

Not on your lists

comp(1485..1637)
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_706_5
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1793..2374)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7P9_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KDA04533.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
5'-terminal protein
scnpilot_solids1_trim150_scaffold_706_6
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2374..7512)
DNA (5139bp) protein (1713aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7Q0_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EIC06994.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
telomere-associated protein rbh
scnpilot_solids1_trim150_scaffold_706_7
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8536..9597)
DNA (1062bp) protein (354aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA04537.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
scnpilot_solids1_trim150_scaffold_706_8
Arthrobacter sp. SPG23, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9841..10275
DNA (435bp) protein (145aa)
DNA repair protein n=1 Tax=Microbacterium paraoxydans RepID=UPI00036B69D0
SPG23_c28, whole genome shotgun sequence {ECO:0000313|EMBL:KIS25754.1}; TaxID=1610703 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. SPG23.;"
UmuD-like protein
scnpilot_solids1_trim150_scaffold_706_9
unknown

Not on your lists

10276..10413
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_706_10
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10863..11228)
DNA (366bp) protein (122aa)
DNA-directed RNA polymerase, sigma subunit (Sigma70/sigma32) n=2 Tax=Microbacterium RepID=H8E3L4_9MICO
von Willebrand factor A {ECO:0000313|EMBL:KIC59116.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
scnpilot_solids1_trim150_scaffold_706_11
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11420..12124)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000305324C rbh
Uncharacterized protein {ECO:0000313|EMBL:ERG64465.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
TetR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_706_12
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12338..13003
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003648F31
Uncharacterized protein {ECO:0000313|EMBL:KGM01261.1}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_706_13
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13070..13876
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Arthrobacter sp. TB 23 RepID=UPI0002E2EC58
Stress response protein YsnF {ECO:0000313|EMBL:KJL21299.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_706_14
Gordonia paraffinivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14098..15591
DNA (1494bp) protein (498aa)
Putative transposase n=1 Tax=Gordonia paraffinivorans NBRC 108238 RepID=M3VGV3_9ACTO rbh
Putative transposase {ECO:0000313|EMBL:GAC86318.1}; TaxID=1223543 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia paraffinivorans NBRC 108238.;"
TnpB family transposase rbh
scnpilot_solids1_trim150_scaffold_706_15
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15627..15926
DNA (300bp) protein (100aa)
cation transporter n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI00036BA344
Cation transporter {ECO:0000313|EMBL:EYT55080.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
cation diffusion facilitator family transporter; K03295 cation efflux system protein, CDF family
scnpilot_solids1_trim150_scaffold_706_16
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16214..17695)
DNA (1482bp) protein (494aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
NADH dehydrogenase (quinone) (EC:1.6.99.5); K05903 NADH dehydrogenase (quinone) [EC:1.6.99.5]
NADH-quinone oxidoreductase subunit N n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6WXD3_9ACTO rbh
scnpilot_solids1_trim150_scaffold_706_17
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17703..19187)
DNA (1485bp) protein (495aa)
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit M n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6V4V0_9ACTO rbh
NADH-quinone oxidoreductase subunit M {ECO:0000313|EMBL:GAB91213.1}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
scnpilot_solids1_trim150_scaffold_706_18
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19190..21016)
DNA (1827bp) protein (609aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K05903 NADH dehydrogenase (quinone) [EC:1.6.99.5] rbh
NADH-quinone oxidoreductase subunit L n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6WGB0_9ACTO rbh
NADH-quinone oxidoreductase subunit L {ECO:0000313|EMBL:GAB91212.1}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
scnpilot_solids1_trim150_scaffold_706_19
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21013..21315)
DNA (303bp) protein (101aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit K n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6WBT4_9ACTO
scnpilot_solids1_trim150_scaffold_706_20
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21312..21872)
DNA (561bp) protein (187aa)
NADH:ubiquinone oxidoreductase subunit 6 (chain J) (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit J n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6VWC3_9ACTO rbh
NADH-quinone oxidoreductase subunit J {ECO:0000313|EMBL:GAB91210.1}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
scnpilot_solids1_trim150_scaffold_706_21
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21869..22807)
DNA (939bp) protein (313aa)
NADH-quinone oxidoreductase subunit H n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6WXC8_9ACTO rbh
NADH-quinone oxidoreductase subunit H {ECO:0000313|EMBL:GAB91209.1}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
respiratory-chain NADH dehydrogenase subunit 1 rbh
scnpilot_solids1_trim150_scaffold_706_22
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22800..24392)
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6V4U7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:GAB91208.1}; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_706_23
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24383..24733)
DNA (351bp) protein (117aa)
NADH-quinone oxidoreductase subunit {ECO:0000256|RuleBase:RU003639}; EC=1.6.5.11 {ECO:0000256|RuleBase:RU003639};; TaxID=1108045 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
NADH-quinone oxidoreductase subunit n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6WGA5_9ACTO
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
scnpilot_solids1_trim150_scaffold_706_24
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24792..25388)
DNA (597bp) protein (199aa)
Regulatory protein TetR n=2 Tax=Microbacterium RepID=H8E3Q2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ50592.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
TetR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_706_25
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25473..26123
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI0003689777
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EZP28197.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
acetyltransferase (GNAT) family protein
scnpilot_solids1_trim150_scaffold_706_26
Propionibacterium freudenreichii, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26986..27405
DNA (420bp) protein (140aa)
Hypothetical secreted protein n=1 Tax=Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) RepID=D7GHZ4_PROFC
Hypothetical secreted protein {ECO:0000313|EMBL:CEH08403.1}; TaxID=1744 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium freudenreichii.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_706_27
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27603..27746
DNA (144bp) protein (48aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA05482.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
scnpilot_solids1_trim150_scaffold_706_trna_1
unknown

Not on your lists

comp(27837..27925)
DNA (89bp)
transferRNA Ser
scnpilot_solids1_trim150_scaffold_706_28
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28183..29070
DNA (888bp) protein (296aa)
transposase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B63013
Transposase {ECO:0000313|EMBL:KHK95186.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
transposase mutator type
scnpilot_solids1_trim150_scaffold_706_29
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29221..30447
DNA (1227bp) protein (409aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E7Z9_9MICO rbh
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:EIC06946.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
transposase IS111A/IS1328/IS1533 rbh
Displaying items 1-30 of 33 in total

View Taxonomy