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scnpilot_solids1_trim150_scaffold_719

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_719_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..379
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLT9_AFIFE
Bifunctional protein GlmU {ECO:0000313|EMBL:CEG09933.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
nucleotidyl transferase
scnpilot_solids1_trim150_scaffold_719_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

445..3612
DNA (3168bp) protein (1056aa)
Double-strand break repair protein AddB n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1V5_9BRAD rbh
Double-strand break repair protein AddB {ECO:0000313|EMBL:CEG09934.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
addB; double-strand break repair protein AddB rbh
scnpilot_solids1_trim150_scaffold_719_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3609..7097
DNA (3489bp) protein (1163aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Double-strand break repair helicase AddA n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1V4_9BRAD rbh
addA; double-strand break repair helicase AddA rbh
scnpilot_solids1_trim150_scaffold_719_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7260..7580
DNA (321bp) protein (107aa)
Thioredoxin n=2 Tax=Afipia RepID=D6V1V3_9BRAD
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
trxA1; thioredoxin TrxA; K03671 thioredoxin 1
scnpilot_solids1_trim150_scaffold_719_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8035..9363)
DNA (1329bp) protein (443aa)
fgs; folylpolyglutamate synthase Fgs (EC:6.3.2.17); K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] rbh
FolC bifunctional protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1V2_9BRAD rbh
Folylpolyglutamate synthase {ECO:0000313|EMBL:CEG09938.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids1_trim150_scaffold_719_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9360..10292)
DNA (933bp) protein (311aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC:6.4.1.2); K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2] rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1V1_9BRAD rbh
scnpilot_solids1_trim150_scaffold_719_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10371..11207)
DNA (837bp) protein (279aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20] rbh
Tryptophan synthase alpha chain n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1V0_9BRAD rbh
scnpilot_solids1_trim150_scaffold_719_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11204..12421)
DNA (1218bp) protein (406aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
trpB; tryptophan synthase beta chain TrpB (EC:4.2.1.20); K01696 tryptophan synthase beta chain [EC:4.2.1.20] rbh
Tryptophan synthase beta chain n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1U9_9BRAD rbh
scnpilot_solids1_trim150_scaffold_719_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12536..13213)
DNA (678bp) protein (226aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
trpF; N-(5'-phosphoribosyl)anthranilate isomerase TrpF (EC:5.3.1.24); K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] rbh
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1U8_9BRAD rbh
scnpilot_solids1_trim150_scaffold_719_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13260..13634)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1U7_9BRAD
Putative integral membrane protein {ECO:0000313|EMBL:CEG09944.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_719_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13679..13987)
DNA (309bp) protein (103aa)
Integration host factor subunit beta n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1U6_9BRAD
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta
scnpilot_solids1_trim150_scaffold_719_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14146..15123)
DNA (978bp) protein (326aa)
protease (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] rbh
Signal peptide peptidase SppA, 36K type n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1U5_9BRAD rbh
Putative signal peptide peptidase SppA {ECO:0000313|EMBL:CEG09946.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids1_trim150_scaffold_719_13
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15270..15518
DNA (249bp) protein (83aa)
Putative Excinuclease ABC, C subunit, N-terminal n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T5S9_9BRAD
Putative Excinuclease ABC, C subunit, N-terminal {ECO:0000313|EMBL:CCE01806.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
excinuclease ABC subunit C
scnpilot_solids1_trim150_scaffold_719_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15697..17397)
DNA (1701bp) protein (567aa)
30S ribosomal protein S1 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NV43_AFIFE rbh
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1 rbh
scnpilot_solids1_trim150_scaffold_719_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17807..18436)
DNA (630bp) protein (210aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
cmk; cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] rbh
Cytidylate kinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1U3_9BRAD rbh
scnpilot_solids1_trim150_scaffold_719_16
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18433..19764)
DNA (1332bp) protein (444aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] rbh
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1U2_9BRAD rbh
scnpilot_solids1_trim150_scaffold_719_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19917..20333
DNA (417bp) protein (139aa)
TIGR02300 family protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLV4_AFIFE
TIGR02300 family protein {ECO:0000313|EMBL:EKS30101.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_719_trna_1
unknown

Not on your lists

20459..20531
DNA (73bp)
transferRNA Ala
scnpilot_solids1_trim150_scaffold_719_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20755..21180
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NI94_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30102.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
heat shock protein Hsp20
scnpilot_solids1_trim150_scaffold_719_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21229..21489
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1T9_9BRAD
Putative small protein {ECO:0000313|EMBL:CEG09952.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_719_20
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21670..23364
DNA (1695bp) protein (565aa)
Dihydroxy-acid dehydratase IlvD {ECO:0000313|EMBL:AEI04804.1}; EC=4.2.1.9 {ECO:0000313|EMBL:AEI04804.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
ilvD1; dihydroxy-acid dehydratase IlvD (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] rbh
Dihydroxy-acid dehydratase n=2 Tax=Oligotropha carboxidovorans RepID=B6JCM8_OLICO rbh
Displaying 21 items

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