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scnpilot_solids1_trim150_scaffold_727

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_727_1
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..504)
DNA (504bp) protein (168aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT78_9GAMM
Oxidoreductase, short chain dehydrogenase/reductase family {ECO:0000313|EMBL:EEB80176.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
scnpilot_solids1_trim150_scaffold_727_2
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

613..1407
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Azoarcus sp. KH32C RepID=H0Q1K8_9RHOO rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:BAL24602.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
scnpilot_solids1_trim150_scaffold_727_3
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1568..2971)
DNA (1404bp) protein (468aa)
(2Fe-2S)-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B75F13 rbh
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KHK89901.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Rieske (2Fe-2S) domain-containing protein
scnpilot_solids1_trim150_scaffold_727_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3202..4314)
DNA (1113bp) protein (371aa)
branched-chain alpha-keto acid dehydrogenase subunit E2; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] rbh
Alpha/beta hydrolase fold n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IBQ5_BEII9 rbh
Acetoin dehydrogenase {ECO:0000313|EMBL:KGM34641.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
scnpilot_solids1_trim150_scaffold_727_5
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4562..5818)
DNA (1257bp) protein (419aa)
(2Fe-2S)-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6A92F rbh
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:EEB78747.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
Rieske (2Fe-2S) domain-containing protein rbh
scnpilot_solids1_trim150_scaffold_727_6
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5898..8444)
DNA (2547bp) protein (849aa)
ligand-gated channel n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B33FAB rbh
TonB-dependent receptor {ECO:0000313|EMBL:CCW16489.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
TonB-dependent receptor rbh
scnpilot_solids1_trim150_scaffold_727_7
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8659..9852)
DNA (1194bp) protein (398aa)
Major facilitator superfamily MFS_1 n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L4E8_9GAMM
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EGG28784.1}; TaxID=876044 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="gamma proteobacterium IMCC3088.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_727_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9948..10799)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002FAF518 rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:ETR77002.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
enoyl-CoA hydratase/isomerase rbh
scnpilot_solids1_trim150_scaffold_727_9
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10882..11838)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B58A05 rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO90609.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_727_10
unknown

Not on your lists

comp(11852..12172)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3D341
scnpilot_solids1_trim150_scaffold_727_11
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12219..12539)
DNA (321bp) protein (107aa)
Rieske (2Fe-2S) domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V8J4_SPHWW
Rieske (2Fe-2S) domain-containing protein; K05710 dioxygenase ferredoxin subunit
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABQ68610.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids1_trim150_scaffold_727_12
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12539..13048)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B575AD
Uncharacterized protein {ECO:0000313|EMBL:EJW21129.1}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_727_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13057..13587)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B65C54
Uncharacterized protein {ECO:0000313|EMBL:KHS43889.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_727_14
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13590..14963)
DNA (1374bp) protein (458aa)
(2Fe-2S)-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3D9D0 rbh
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:ENO85561.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
Rieske (2Fe-2S) domain-containing protein rbh
scnpilot_solids1_trim150_scaffold_727_15
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14981..16123)
DNA (1143bp) protein (381aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AJA09596.1}; EC=2.3.1.9 {ECO:0000313|EMBL:AJA09596.1};; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
acetyl-CoA acetyltransferase (EC:2.3.1.9) rbh
acetyl-CoA acetyltransferase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B66773 rbh
scnpilot_solids1_trim150_scaffold_727_16
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16148..16597)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6A6E5
DNA-binding protein {ECO:0000313|EMBL:ESZ86609.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_727_17
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16734..17519
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZX92_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD50004.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
xylose isomerase domain-containing protein
scnpilot_solids1_trim150_scaffold_727_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17537..19123
DNA (1587bp) protein (529aa)
AMP-dependent synthetase and ligase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VGT6_RHOPX rbh
AMP-dependent synthetase and ligase rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADU45333.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
scnpilot_solids1_trim150_scaffold_727_19
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19179..20384
DNA (1206bp) protein (402aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3F12A rbh
acyl-CoA dehydrogenase domain-containing protein rbh
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABS62119.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids1_trim150_scaffold_727_20
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20387..21067)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B69050 rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB17290.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_727_21
unknown

Not on your lists

comp(21083..21211)
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_727_22
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21284..23794)
DNA (2511bp) protein (837aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VHZ3_9SPHN
Scaffold15, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30963.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TonB-dependent receptor
scnpilot_solids1_trim150_scaffold_727_23
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23961..24728
DNA (768bp) protein (256aa)
Alcohol dehydrogenase n=1 Tax=Lactobacillus fermentum (strain NBRC 3956 / LMG 18251) RepID=B2GBX8_LACF3
alcohol dehydrogenase
Alcohol dehydrogenase {ECO:0000313|EMBL:BAG27160.1}; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
scnpilot_solids1_trim150_scaffold_727_24
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24739..26010
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI000362A228 rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO86203.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
cytochrome P450
scnpilot_solids1_trim150_scaffold_727_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26038..26724
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00037A4D55
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:GAD50016.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
TetR family transcriptional regulator
Displaying 25 items

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