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scnpilot_solids1_trim150_scaffold_876

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_876_1
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(471..1475)
DNA (1005bp) protein (335aa)
UPI0003CFF6F4 related cluster n=1 Tax=unknown RepID=UPI0003CFF6F4 rbh
NADP-dependent oxidoreductase {ECO:0000313|EMBL:ESZ86621.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
alcohol dehydrogenase; K07119 rbh
scnpilot_solids1_trim150_scaffold_876_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1514..2275)
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQJ9_PARL1 rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS62182.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids1_trim150_scaffold_876_3
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2276..3661)
DNA (1386bp) protein (462aa)
(2Fe-2S)-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B75F13
Rieske (2Fe-2S) domain-containing protein rbh
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:CCA90176.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_solids1_trim150_scaffold_876_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3898..5010)
DNA (1113bp) protein (371aa)
branched-chain alpha-keto acid dehydrogenase subunit E2; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] rbh
Alpha/beta hydrolase fold n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZD00_GLUDA rbh
Acetoin dehydrogenase {ECO:0000313|EMBL:KGM34641.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
scnpilot_solids1_trim150_scaffold_876_5
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5015..6052)
DNA (1038bp) protein (346aa)
pdhB; pyruvate dehydrogenase E1 component subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Putative pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HHP7_GLUDA
Pyruvate dehydrogenase {ECO:0000313|EMBL:KEO92359.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
scnpilot_solids1_trim150_scaffold_876_6
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6076..7041)
DNA (966bp) protein (322aa)
ABC transporter substrate-binding protein n=1 Tax=Acinetobacter nosocomialis M2 RepID=V6INF4_9GAMM rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEO92360.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha rbh
scnpilot_solids1_trim150_scaffold_876_7
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7320..8675
DNA (1356bp) protein (452aa)
Major facilitator superfamily MFS_1 n=2 Tax=Pseudomonas mendocina RepID=A4XR79_PSEMY rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO92365.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
major facilitator superfamily transporter rbh
scnpilot_solids1_trim150_scaffold_876_8
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8694..9455
DNA (762bp) protein (254aa)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT78_9GAMM
putative oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
scnpilot_solids1_trim150_scaffold_876_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9458..10207
DNA (750bp) protein (250aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:CDP54159.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CDP54159.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
KR domain superfamily protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT46_9GAMM
short-chain dehydrogenase/reductase SDR
scnpilot_solids1_trim150_scaffold_876_10
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10218..10988
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5R9_9GAMM
Trehalose utilization {ECO:0000313|EMBL:ETN91441.1}; TaxID=1411685 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MOLA455.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_876_11
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11007..12296
DNA (1290bp) protein (430aa)
Linalool 8-monooxygenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B41869
Uncharacterized protein {ECO:0000313|EMBL:KEO92363.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
cytochrome P450
scnpilot_solids1_trim150_scaffold_876_12
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12322..13041
DNA (720bp) protein (240aa)
TetR family transcriptional regulator n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI000376544C
Uncharacterized protein {ECO:0000313|EMBL:KEO92364.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
TetR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_876_13
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13197..15608)
DNA (2412bp) protein (804aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VHZ3_9SPHN rbh
Scaffold15, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30963.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TonB-dependent receptor rbh
scnpilot_solids1_trim150_scaffold_876_14
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15985..16527
DNA (543bp) protein (181aa)
Carboxymuconolactone decarboxylase n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZX07_DESOH
Uncharacterized protein {ECO:0000313|EMBL:KEO92368.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
carboxymuconolactone decarboxylase
scnpilot_solids1_trim150_scaffold_876_15
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16532..17569
DNA (1038bp) protein (346aa)
Oxidoreductase n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y6T0_9RHOO rbh
Oxidoreductase {ECO:0000313|EMBL:ENO87285.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
alcohol dehydrogenase; K07119 rbh
scnpilot_solids1_trim150_scaffold_876_16
unknown

Not on your lists

17780..17974
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_876_17
unknown

Not on your lists

comp(17911..18144)
DNA (234bp) protein (78aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_876_trna_1
unknown

Not on your lists

comp(18366..18438)
DNA (73bp)
transferRNA Lys
scnpilot_solids1_trim150_scaffold_876_18
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18704..19642)
DNA (939bp) protein (313aa)
Rod shape-determining protein RodA n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW09_PARL1 rbh
Rod shape-determining protein RodA {ECO:0000313|EMBL:GAK44818.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
rod shape-determining protein RodA; K05837 rod shape determining protein RodA rbh
Displaying 19 items

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