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scnpilot_solids1_trim150_scaffold_990

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_990_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(51..1265)
DNA (1215bp) protein (405aa)
Transposase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z4I5_9SPHN rbh
Transposase {ECO:0000313|EMBL:EGD60595.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
transposase, mutator type rbh
scnpilot_solids1_trim150_scaffold_990_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1752..2003
DNA (252bp) protein (84aa)
Putative phage repressor n=1 Tax=Sphingopyxis macrogoltabida RepID=A9ZM06_SPHMC
Uncharacterized protein {ECO:0000313|EMBL:AKH41841.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative phage repressor
scnpilot_solids1_trim150_scaffold_990_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2496..3734
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0003772466 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAM01980.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
phage integrase
scnpilot_solids1_trim150_scaffold_990_4
unknown

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3745..4464
DNA (720bp) protein (240aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_990_5
unknown

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4594..4806
DNA (213bp) protein (71aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_990_6
unknown

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4803..5093
DNA (291bp) protein (97aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_990_7
unknown

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5093..5590
DNA (498bp) protein (166aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_990_8
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5587..7395
DNA (1809bp) protein (603aa)
Bacterial conjugation protein, ATP binding domain trwB n=1 Tax=Caulobacter crescentus (strain NA1000 / CB15N) RepID=B8GZQ6_CAUCN
Type IV secretory pathway, VirD4 component {ECO:0000313|EMBL:EZP67597.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
trwB; conjugation protein, ATP binding domain trwB
scnpilot_solids1_trim150_scaffold_990_9
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7395..10160
DNA (2766bp) protein (922aa)
trwC; DNA relaxase/conjugal transfer nickase-helicase TrwC (EC:3.6.1.-)
DNA relaxase/conjugal transfer nickase-helicase trwC n=1 Tax=Caulobacter crescentus (strain NA1000 / CB15N) RepID=B8GZQ5_CAUCN
Uncharacterized protein {ECO:0000313|EMBL:KHA64590.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
scnpilot_solids1_trim150_scaffold_990_10
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10936..11814
DNA (879bp) protein (293aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
DNA methylase N-4/N-6 domain-containing protein; K07319 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72] rbh
Adenine-specific methyltransferase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MRL9_9SPHN rbh
scnpilot_solids1_trim150_scaffold_990_11
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11814..12275
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MKY3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW16252.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_990_12
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12289..13611
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MLE0_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:CCW16253.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_990_13
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13615..15516
DNA (1902bp) protein (634aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MHL4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:CCW16254.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
helicase
scnpilot_solids1_trim150_scaffold_990_14
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15516..16316
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B8R4_PARDP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL71908.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_solids1_trim150_scaffold_990_15
unknown

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16530..16661
DNA (132bp) protein (44aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_990_trna_1
unknown

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comp(16844..16916)
DNA (73bp)
transferRNA Lys
scnpilot_solids1_trim150_scaffold_990_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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17258..18682
DNA (1425bp) protein (475aa)
Putative outer membrane protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W274_9SPHN
Putative outer membrane protein {ECO:0000313|EMBL:ENY81607.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative outer membrane protein rbh
scnpilot_solids1_trim150_scaffold_990_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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18679..19251
DNA (573bp) protein (191aa)
RND family efflux transporter MFP subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDR5_9SPHN
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:ENY81606.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
HlyD family secretion protein; K02005 HlyD family secretion protein
Displaying 18 items

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