ggKbase home page

scnpilot_solids1_trim150_scaffold_3956

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_3956_1
unknown

Not on your lists

1..99
DNA (99bp) protein (33aa)
periplasmic sensor signal transduction histidine kinase; K07673 two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] id=12493661 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
scnpilot_solids1_trim150_scaffold_3956_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

96..764
DNA (669bp) protein (223aa)
transcriptional regulator NarL; K07684 two-component system, NarL family, nitrate/nitrite response regulator NarL id=12493660 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
transcriptional regulator NarL; K07684 two-component system, NarL family, nitrate/nitrite response regulator NarL
Two Component Transcriptional Regulator, LuxR family {ECO:0000313|EMBL:AAZ97352.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids1_trim150_scaffold_3956_3
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1150..2994
DNA (1845bp) protein (615aa)
carbamoyltransferase; K00612 carbamoyltransferase [EC:2.1.3.-] rbh
Carbamoyltransferase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E774_9GAMM rbh
Tax=RBG_16_Gamma2_60_9_curated
scnpilot_solids1_trim150_scaffold_3956_4
CG_Cyano_01, Cyanobacteria, Bacteria

Not on your lists

2997..3404
DNA (408bp) protein (136aa)
Uncharacterized protein n=3 Tax=Arthrospira RepID=K1WSI3_ARTPT
hypothetical protein
Tax=CG_Cyano_01
scnpilot_solids1_trim150_scaffold_3956_5
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3404..3556
DNA (153bp) protein (51aa)
Putative uncharacterized protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E776_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGV28043.1}; Flags: Precursor;; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3956_6
CG_Pacebac_02, Pacebacteria, Microgenomates, Bacteria

Not on your lists

3606..4781
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI0003790A8D
Tax=CG_Pacebac_02
scnpilot_solids1_trim150_scaffold_3956_7
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5025..5315)
DNA (291bp) protein (97aa)
Putative exported protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QFL1_BORBO
Uncharacterized protein {ECO:0000313|EMBL:KGD58815.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (Pseudomonas pseudomallei).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3956_8
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5312..5923)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FZA4_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EDM80988.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3956_9
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6029..7363)
DNA (1335bp) protein (445aa)
ferric reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AD2D6 rbh
ferric reductase rbh
Predicted ferric reductase {ECO:0000313|EMBL:BAE52139.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
scnpilot_solids1_trim150_scaffold_3956_10
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7494..7838)
DNA (345bp) protein (115aa)
cupin n=1 Tax=Thiobacillus denitrificans RepID=UPI000363965A
Cupin domain protein {ECO:0000313|EMBL:GAM10196.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3956_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7946..8521)
DNA (576bp) protein (192aa)
NADPH-dependent FMN reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUS3_9GAMM
putative flavoprotein
Putative flavoprotein {ECO:0000313|EMBL:AGG87276.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_3956_12
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

comp(8767..9087)
DNA (321bp) protein (107aa)
Small multidrug resistance protein n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W6M3_DESIS
small multidrug resistance protein; K11741 quaternary ammonium compound-resistance protein SugE
Small multidrug resistance protein {ECO:0000313|EMBL:ADU65023.1}; TaxID=653733 species="Bacteria; Chrysiogenetes; Chrysiogenales; Chrysiogenaceae; Desulfurispirillum.;" source="Desulfurispirillum indicum (strain ATCC BAA-1389 / S5).;"
scnpilot_solids1_trim150_scaffold_3956_13
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9156..9902)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QWT0_ISOPI rbh
hypothetical protein; K06927 rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV62980.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
scnpilot_solids1_trim150_scaffold_3956_14
Acinetobacter sp. CIP 64.7, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9967..10218)
DNA (252bp) protein (84aa)
Uncharacterized protein n=3 Tax=Acinetobacter RepID=N8Q8R4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ENX31102.1}; TaxID=1144673 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. CIP 64.7.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3956_15
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(10362..10577)
DNA (216bp) protein (72aa)
hypothetical protein; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
Sortase-like acyltransferase n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EQA2_9CYAN
Sortase-like acyltransferase {ECO:0000313|EMBL:EKU99259.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
scnpilot_solids1_trim150_scaffold_3956_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(10826..11224)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJK4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69589.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
scnpilot_solids1_trim150_scaffold_3956_17
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11388..11945)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0ADE3_NITEC
Uncharacterized protein {ECO:0000313|EMBL:GAN34828.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_3956_18
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12069..12869)
DNA (801bp) protein (267aa)
Putative Membrane protein-like n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0U094_9BRAD rbh
Putative Membrane protein-like {ECO:0000313|EMBL:CCE12132.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
membrane protein
scnpilot_solids1_trim150_scaffold_3956_19
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13143..13529)
DNA (387bp) protein (129aa)
Putative uncharacterized protein id=3247135 bin=GWC2_Deltaproteobacteria_66_88 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
scnpilot_solids1_trim150_scaffold_3956_20
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13926..14219)
DNA (294bp) protein (98aa)
Cro/Ci family transcriptional regulator n=1 Tax=Pseudomonas stutzeri TS44 RepID=I4JIM3_PSEST
XRE family transcriptional regulator {ECO:0000313|EMBL:AKC87299.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
Cro/Ci family transcriptional regulator
scnpilot_solids1_trim150_scaffold_3956_21
Pseudomonas chloritidismutans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14219..14398)
DNA (180bp) protein (60aa)
Addiction module killer protein n=1 Tax=Pseudomonas chloritidismutans AW-1 RepID=V4QHQ5_PSECO
Addiction module killer protein {ECO:0000313|EMBL:ESR01328.1}; TaxID=1263865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chloritidismutans AW-1.;"
plasmid maintenance system killer protein; K07334 proteic killer suppression protein
scnpilot_solids1_trim150_scaffold_3956_22
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14651..15214)
DNA (564bp) protein (188aa)
acetyltransferase; K00661 maltose O-acetyltransferase [EC:2.3.1.79]
Acetyltransferase n=1 Tax=Burkholderia sp. YI23 RepID=G8MMG7_9BURK
Acetyltransferase {ECO:0000313|EMBL:AET94006.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
scnpilot_solids1_trim150_scaffold_3956_23
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15268..15747)
DNA (480bp) protein (160aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RIR0_ACCPU
Leucine efflux protein {ECO:0000313|EMBL:EXI66849.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
lysine exporter protein LysE/YggA
scnpilot_solids1_trim150_scaffold_3956_24
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15892..16230)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NZE4_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI09570.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_solids1_trim150_scaffold_3956_25
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16650..16937)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMT3_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
scnpilot_solids1_trim150_scaffold_3956_26
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16941..17282)
DNA (342bp) protein (114aa)
Addiction module killer protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZIE9_THASP
Uncharacterized protein {ECO:0000313|EMBL:CDQ09461.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
addiction module killer protein
scnpilot_solids1_trim150_scaffold_3956_27
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17279..17506)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9M6_9PROT
hypothetical protein
Tax=CG_Beta_01
scnpilot_solids1_trim150_scaffold_3956_28
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17747..18634)
DNA (888bp) protein (296aa)
thiosulfate sulfurtransferase (EC:2.8.1.1); K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA536-K22 RepID=UPI0003B47504
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Displaying 28 items

View Taxonomy