ggKbase home page

scnpilot_solids1_trim150_scaffold_1114

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1114_1
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1251)
DNA (1251bp) protein (417aa)
conjugal transfer protein TrbI n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI00023750FD
Type IV secretion system protein virB10 {ECO:0000313|EMBL:EXI84244.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
scnpilot_solids1_trim150_scaffold_1114_2
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1253..1786)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW39_ACCPU
conjugal transfer protein TrbH
Uncharacterized protein {ECO:0000313|EMBL:ACV37849.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_solids1_trim150_scaffold_1114_3

Not on your lists

comp(1788..3026)
DNA (1239bp) protein (413aa)
TrbG mating pair formation protein n=1 Tax=Burkholderia cepacia RepID=K4IYR8_BURCE
TrbG mating pair formation protein {ECO:0000313|EMBL:ADD63279.1}; TaxID=743682 species="Bacteria; environmental samples.;" source="uncultured bacterium pAKD4.;"
trbG; conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
scnpilot_solids1_trim150_scaffold_1114_4
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3043..3831)
DNA (789bp) protein (263aa)
TrbF protein of DNA transfer system n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NWM2_AROAE
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EXI84247.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
trbF; conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
scnpilot_solids1_trim150_scaffold_1114_5

Not on your lists

comp(3828..6467)
DNA (2640bp) protein (880aa)
TrbE protein n=2 Tax=root RepID=F2Q657_9BACT
TrbE {ECO:0000313|EMBL:AAY97919.1}; TaxID=1003194 species="other sequences; plasmids.;" source="Plasmid pMCBF1.;"
trbE; conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4
scnpilot_solids1_trim150_scaffold_1114_6
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6464..6775)
DNA (312bp) protein (104aa)
Conjugation protein protein TrbD n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NWM4_AROAE
trbD; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
Conjugation protein protein TrbD {ECO:0000313|EMBL:CAI10540.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_solids1_trim150_scaffold_1114_7

Not on your lists

comp(6762..7181)
DNA (420bp) protein (140aa)
Conjugal transfer protein TrbC n=2 Tax=Bacteria RepID=A1WDP7_ACISJ
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Conjugative transfer protein {ECO:0000313|EMBL:AFV47182.1}; TrbC conjugal transfer protein {ECO:0000313|EMBL:CAG26000.1}; Flags: Precursor;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_solids1_trim150_scaffold_1114_8
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7185..8150)
DNA (966bp) protein (322aa)
KilB protein n=6 Tax=root RepID=Q57316_ECOLX
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KFL46886.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
trbB; conjugal transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
scnpilot_solids1_trim150_scaffold_1114_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8981..10009
DNA (1029bp) protein (343aa)
plasmid encoded RepA protein id=12553825 bin=BDI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BDI organism_group=Betaproteobacteria rbh
Plasmid replication protein RepA {ECO:0000313|EMBL:GAO22503.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
plasmid encoded RepA protein
scnpilot_solids1_trim150_scaffold_1114_10
Yersinia pseudotuberculosis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11168..11452
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002F2FEDC
putative stable inheritance protein
Putative stable inheritance protein {ECO:0000313|EMBL:ABS45631.1}; TaxID=349747 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pseudotuberculosis serotype O:1b (strain IP 31758).;"
scnpilot_solids1_trim150_scaffold_1114_11
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11519..12298
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVT7_ACCPU
hypothetical protein; K03496 chromosome partitioning protein
Uncharacterized protein {ECO:0000313|EMBL:ACV37747.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_solids1_trim150_scaffold_1114_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12295..13275
DNA (981bp) protein (327aa)
ParB-like partition protein n=11 Tax=Bacteria RepID=E8U2P7_ALIDB
ParB family protein; K03497 chromosome partitioning protein, ParB family
KorB {ECO:0000313|EMBL:BAC82031.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
scnpilot_solids1_trim150_scaffold_1114_13

Not on your lists

13278..13622
DNA (345bp) protein (115aa)
Uncharacterized protein n=2 Tax=uncultured bacterium pAKD4 RepID=D4N5L2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ADD63317.1}; TaxID=743682 species="Bacteria; environmental samples.;" source="uncultured bacterium pAKD4.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1114_14
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13623..14075)
DNA (453bp) protein (151aa)
conjugal transfer protein TraM n=1 Tax=Methylomicrobium buryatense RepID=UPI000345963A
Protein traM {ECO:0000313|EMBL:CCE25811.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
conjugal transfer protein TraM
scnpilot_solids1_trim150_scaffold_1114_15
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14072..14800)
DNA (729bp) protein (243aa)
TraL conjugative transfer protein n=3 Tax=Bacteria RepID=D4N5K9_9BACT
TraL conjugative transfer protein {ECO:0000313|EMBL:AFU76018.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
conjugal transfer protein tral
scnpilot_solids1_trim150_scaffold_1114_16
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15394..15753
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVV9_ACCPU
conjugal transfer relaxosome component TraJ
Uncharacterized protein {ECO:0000313|EMBL:ACV37769.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_solids1_trim150_scaffold_1114_17
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15774..17843
DNA (2070bp) protein (690aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVW0_ACCPU
conjugal transfer relaxase TraI
Uncharacterized protein {ECO:0000313|EMBL:ACV37770.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
scnpilot_solids1_trim150_scaffold_1114_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17840..19711
DNA (1872bp) protein (624aa)
IncP-type DNA transfer coupling protein TraG n=1 Tax=Nitrosospira sp. APG3 RepID=M5DW64_9PROT rbh
IncP-type DNA transfer coupling protein TraG {ECO:0000313|EMBL:CCU63565.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
scnpilot_solids1_trim150_scaffold_1114_19

Not on your lists

19711..20289
DNA (579bp) protein (193aa)
TraF maturation peptidase n=1 Tax=uncultured bacterium RepID=Q1H9X2_9BACT
TraF maturation peptidase {ECO:0000313|EMBL:CAJ43353.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
conjugal transfer peptidase TraF
scnpilot_solids1_trim150_scaffold_1114_20
unknown

Not on your lists

20411..20581
DNA (171bp) protein (57aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1114_21
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20622..20786)
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7D2_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75339.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1114_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21059..21685
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7D3_NITMU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB75338.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1114_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21698..22321
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7D4_NITMU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB75337.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1114_24
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22682..23002
DNA (321bp) protein (107aa)
Putative DNA-binding protein n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KK62_STEMA
putative DNA-binding protein
Putative DNA-binding protein {ECO:0000313|EMBL:CCH11451.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
scnpilot_solids1_trim150_scaffold_1114_25
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22999..23685
DNA (687bp) protein (229aa)
Nuclease (SNase-like) n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7H3_NITMU rbh
nuclease rbh
Nuclease (SNase-like) {ECO:0000313|EMBL:ABB75298.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
scnpilot_solids1_trim150_scaffold_1114_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24414..24947)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFC9_9PROT
WGS project CAUA00000000 data, contig 1 {ECO:0000313|EMBL:CCU60989.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1114_27
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25494..25832
DNA (339bp) protein (113aa)
COG0286: Type I restriction-modification system methyltransferase subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFR7_9PROT
WGS project CAUA00000000 data, contig 1 {ECO:0000313|EMBL:CCU61013.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1114_28
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25903..26787
DNA (885bp) protein (295aa)
ParB-like nuclease n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y667_NITMU
ParB-like nuclease; K03497 chromosome partitioning protein, ParB family
ParB-like nuclease {ECO:0000313|EMBL:ABB75754.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Displaying 28 items

View Taxonomy