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scnpilot_solids1_trim150_scaffold_1128

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1128_trna_1
unknown

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112..185
DNA (74bp)
transferRNA Pro
scnpilot_solids1_trim150_scaffold_1128_1
Mycobacterium canettii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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1015..1296
DNA (282bp) protein (94aa)
Transposase IS21 family n=1 Tax=Mycobacterium canettii CIPT 140070008 RepID=L0Q811_9MYCO
Transposase (fragment)
Transposase, IS21 family protein {ECO:0000313|EMBL:CCC44445.1}; TaxID=1048245 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium canettii (strain CIPT 140010059).;"
scnpilot_solids1_trim150_scaffold_1128_2
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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1314..1898
DNA (585bp) protein (195aa)
Integrase, catalytic region n=1 Tax=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) RepID=A1TX73_MARAV
integrase catalytic subunit; K07497 putative transposase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
scnpilot_solids1_trim150_scaffold_1128_3
Tetrasphaera australiensis, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2156..3238
DNA (1083bp) protein (361aa)
Transposase n=2 Tax=Microvirga sp. WSM3557 RepID=I4Z497_9RHIZ
Transposase {ECO:0000313|EMBL:CCH75423.1}; TaxID=1193182 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis Ben110.;"
transposase IS116/IS110/IS902 family protein rbh
scnpilot_solids1_trim150_scaffold_1128_4

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3452..3796
DNA (345bp) protein (115aa)
Putative IS481 family integrase n=1 Tax=Octadecabacter arcticus 238 RepID=M9RDI7_9RHOB
Marine sediment metagenome DNA, contig: S01H1_S28181 {ECO:0000313|EMBL:GAG34437.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative IS481 family integrase
scnpilot_solids1_trim150_scaffold_1128_5
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3831..4646)
DNA (816bp) protein (272aa)
Transposase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PRI5_9FIRM rbh
Transposase {ECO:0000313|EMBL:EKP95542.1}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
integrase catalytic subunit
scnpilot_solids1_trim150_scaffold_1128_6
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(4709..4987)
DNA (279bp) protein (93aa)
Transposase IS3/IS911 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AUW5_RUBXD
transposase IS3/IS911; K07483 transposase
Transposase IS3/IS911 {ECO:0000313|EMBL:ABG04813.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
scnpilot_solids1_trim150_scaffold_1128_7
unknown

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5447..6043
DNA (597bp) protein (199aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1128_8
unknown

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6052..7245
DNA (1194bp) protein (398aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1128_9
unknown

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7485..7931
DNA (447bp) protein (149aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1128_10
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8238..9110
DNA (873bp) protein (291aa)
DNA resolvase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LAS8_9RHIZ
DNA resolvase {ECO:0000313|EMBL:EIZ81654.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
DNA resolvase
scnpilot_solids1_trim150_scaffold_1128_11
unknown

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comp(9478..11724)
DNA (2247bp) protein (749aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1128_12
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12204..12704
DNA (501bp) protein (167aa)
Toxin-antitoxin system, antitoxin component, MerR family n=1 Tax=Streptomyces ipomoeae 91-03 RepID=L1KXC6_9ACTO
DNA binding domain protein, excisionase family
Toxin-antitoxin system, antitoxin component, MerR family {ECO:0000313|EMBL:EKX65204.1}; TaxID=698759 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ipomoeae 91-03.;"
scnpilot_solids1_trim150_scaffold_1128_13
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12901..13320
DNA (420bp) protein (140aa)
addiction module antitoxin n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B64967
XRE family transcriptional regulator
Plasmid maintenance system antidote protein {ECO:0000313|EMBL:BAF90645.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_solids1_trim150_scaffold_1128_14
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13530..13856
DNA (327bp) protein (109aa)
transcriptional regulator n=1 Tax=Deinococcus sp. 2009 RepID=UPI0003B6BB6C
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:BAJ32035.1}; TaxID=452652 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
scnpilot_solids1_trim150_scaffold_1128_15
unknown

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13853..14005
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1128_16
Anabaena sp. 90, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(14244..14516)
DNA (273bp) protein (91aa)
Helix-turn-helix domain-containing DNA-binding protein n=1 Tax=Anabaena sp. 90 RepID=K7W1J7_9NOST
helix-turn-helix domain-containing DNA-binding protein
Helix-turn-helix domain-containing DNA-binding protein {ECO:0000313|EMBL:AFW93599.1}; TaxID=46234 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena sp. 90.;"
scnpilot_solids1_trim150_scaffold_1128_17
unknown

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comp(14650..15030)
DNA (381bp) protein (127aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1128_18
unknown

Not on your lists

15331..15600
DNA (270bp) protein (90aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1128_19
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15631..16173)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Amycolatopsis methanolica RepID=UPI0003787D05
Uncharacterized protein {ECO:0000313|EMBL:AIJ23503.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1128_20
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16170..16835)
DNA (666bp) protein (222aa)
Peptidase S41 family protein n=1 Tax=Psychroflexus torquis (strain ATCC 700755 / ACAM 623) RepID=K4IDX7_PSYTT
Uncharacterized protein {ECO:0000313|EMBL:KGM52827.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
peptidase S41 family protein
scnpilot_solids1_trim150_scaffold_1128_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16975..17982
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037A98FB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS18875.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
scnpilot_solids1_trim150_scaffold_1128_22
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18262..18750
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:257 RepID=R5XLZ1_9FIRM
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
scnpilot_solids1_trim150_scaffold_1128_23
unknown

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comp(18903..19043)
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying 24 items

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