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scnpilot_solids1_trim150_scaffold_1176

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1176_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2..250
DNA (249bp) protein (83aa)
putative long-chain fatty acid transport protein id=12493176 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative long-chain fatty acid transport protein
Putative long-chain fatty acid transport protein {ECO:0000313|EMBL:AAZ96529.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids1_trim150_scaffold_1176_2
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

517..1005
DNA (489bp) protein (163aa)
Phage-related integrase n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YCR8_9RHOO
Phage-related integrase {ECO:0000313|EMBL:ENO89305.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
integrase family protein
scnpilot_solids1_trim150_scaffold_1176_3
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1450..1917)
DNA (468bp) protein (156aa)
LysR family transcriptional regulator n=1 Tax=Cupriavidus sp. WS RepID=UPI0003658AD3
LysR family transcriptional regulator {ECO:0000313|EMBL:EWS78519.1}; TaxID=1444770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa PLS229.;"
LysR family transcriptional regulator; K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator
scnpilot_solids1_trim150_scaffold_1176_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2137..2910
DNA (774bp) protein (258aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W5S4_ACISJ rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM41599.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_1176_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2986..3267
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W5S3_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM41598.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_1176_6
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3383..3811
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa CF77 RepID=U8BGK3_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KIL05096.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
anti-ECF sigma factor ChrR
scnpilot_solids1_trim150_scaffold_1176_7
Xanthomonas euvesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3870..4379
DNA (510bp) protein (170aa)
Amine oxidase n=2 Tax=Proteobacteria RepID=A1W5R9_ACISJ
amine oxidase
Putative amine oxidase {ECO:0000313|EMBL:CAJ24008.1}; TaxID=316273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. vesicatoria (strain 85-10).;"
scnpilot_solids1_trim150_scaffold_1176_8
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4396..5415
DNA (1020bp) protein (340aa)
Zn-dependent alcohol dehydrogenase (EC:1.1.1.1); K00001 alcohol dehydrogenase [EC:1.1.1.1] rbh
Alcohol dehydrogenase GroES domain protein n=2 Tax=Proteobacteria RepID=A1W5R7_ACISJ rbh
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:ABM41592.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_1176_9
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5689..6915
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa CF77 RepID=U8BGJ9_PSEAI rbh
MFS transporter {ECO:0000313|EMBL:KGH10006.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1176_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6994..7512
DNA (519bp) protein (173aa)
Carboxymuconolactone decarboxylase n=2 Tax=Proteobacteria RepID=A1W5Q3_ACISJ
carboxymuconolactone decarboxylase
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ABM41578.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_1176_11
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7695..8537
DNA (843bp) protein (281aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881, ECO:0000313|EMBL:KIL05107.1}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
trxB; thioredoxin-disulfide reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UAG9_XANAP
scnpilot_solids1_trim150_scaffold_1176_12
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8599..9927)
DNA (1329bp) protein (443aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa CF77 RepID=U8BGF0_PSEAI rbh
integral membrane sensor signal transduction histidine kinase rbh
scnpilot_solids1_trim150_scaffold_1176_13
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9924..10592)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa CF77 RepID=U8BGK4_PSEAI rbh
Transcriptional regulator {ECO:0000313|EMBL:KIL05108.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
armR; ArmR, DNA-binding response regulator rbh
scnpilot_solids1_trim150_scaffold_1176_14
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10739..12664
DNA (1926bp) protein (642aa)
dsbD; Thiol:disulfide interchange protein; K04084 thiol:disulfide interchange protein DsbD [EC:1.8.1.8] rbh
Thiol:disulfide interchange protein DsbD n=2 Tax=Proteobacteria RepID=Q1LKQ5_RALME rbh
Thiol:disulfide interchange protein {ECO:0000313|EMBL:KIL05109.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
scnpilot_solids1_trim150_scaffold_1176_15
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12661..13479
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa CF77 RepID=U8BIC3_PSEAI rbh
Redoxin {ECO:0000313|EMBL:KFJ91403.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
thiol disulfide interchange protein rbh
scnpilot_solids1_trim150_scaffold_1176_16
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13505..14278
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa CF77 RepID=U8BIK4_PSEAI rbh
Dihydroneopterin aldolase {ECO:0000313|EMBL:KIL05111.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
dsbG; disulfide isomerase/thiol-disulfide oxidase; K03805 thiol:disulfide interchange protein DsbG rbh
scnpilot_solids1_trim150_scaffold_1176_17
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14372..15202
DNA (831bp) protein (277aa)
LysR-family transcriptional regulator TraR n=11 Tax=Pseudomonas aeruginosa RepID=M2ZS83_PSEAI
D-alanyl-D-alanine endopeptidase {ECO:0000313|EMBL:ETD48023.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
LysR-family transcriptional regulator TraR
scnpilot_solids1_trim150_scaffold_1176_18
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15353..15868)
DNA (516bp) protein (172aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAA8_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05020.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_1176_19
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16080..16325
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4XEP1_PSEDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI23805.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
Displaying 19 items

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