ggKbase home page

scnpilot_solids1_trim150_scaffold_1232

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1232_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2189)
DNA (2187bp) protein (729aa)
Penicillin-binding protein 1A n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URQ4_9SPHN rbh
Penicillin-binding protein 1A {ECO:0000313|EMBL:ENY81019.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
penicillin-binding protein 1A rbh
scnpilot_solids1_trim150_scaffold_1232_2
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2267..2668)
DNA (402bp) protein (134aa)
protein-methionine-S-oxide reductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GNU2_SPHAL
scnpilot_solids1_trim150_scaffold_1232_3
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2832..3350
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GNU3_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54679.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
scnpilot_solids1_trim150_scaffold_1232_4
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3394..4032)
DNA (639bp) protein (213aa)
peroxiredoxin (EC:1.11.1.15) rbh
Alkyl hydroperoxide reductase subunit C-like protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MJ73_9SPHN rbh
Alkyl hydroperoxide reductase subunit C-like protein {ECO:0000313|EMBL:CCW17001.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
scnpilot_solids1_trim150_scaffold_1232_5
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4386..6218
DNA (1833bp) protein (611aa)
yvgR; sulfite reductase flavoprotein subunit (EC:1.8.1.2); K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] rbh
Sulfite reductase [NADPH] flavoprotein alpha-component {ECO:0000256|PIRNR:PIRNR000207, ECO:0000256|SAAS:SAAS00014038}; Short=SiR-FP {ECO:0000256|PIRNR:PIRNR000207};; EC=1.8.1.2 {ECO:0000256|PIRNR:PIRNR000207, ECO:0000256|SAAS:SAAS00013953};; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
Sulfite reductase [NADPH] flavoprotein alpha-component n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82W44_NITEU rbh
scnpilot_solids1_trim150_scaffold_1232_6
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6230..7948
DNA (1719bp) protein (573aa)
yvgQ; sulfite reductase subunit beta (EC:1.8.1.2); K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] rbh
Sulfite reductase [NADPH] hemoprotein beta-component {ECO:0000255|HAMAP-Rule:MF_01540}; Short=SiR-HP {ECO:0000255|HAMAP-Rule:MF_01540};; Short=SiRHP {ECO:0000255|HAMAP-Rule:MF_01540};; EC=1.8.1.2 {ECO:0000255|HAMAP-Rule:MF_01540};; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
Sulfite reductase [NADPH] hemoprotein beta-component n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=CYSI_NITEU rbh
scnpilot_solids1_trim150_scaffold_1232_7
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7974..9317)
DNA (1344bp) protein (448aa)
MFS transporter n=1 Tax=Sphingomonas wittichii RepID=UPI0002F36077 rbh
general substrate transporter rbh
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
scnpilot_solids1_trim150_scaffold_1232_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9349..10011)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WEW0_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:ENY82243.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K06997 rbh
scnpilot_solids1_trim150_scaffold_1232_9
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10074..10730
DNA (657bp) protein (219aa)
thiamine monophosphate synthase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
Thiamine monophosphate synthase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GNP4_SPHAL
Thiamine monophosphate synthase {ECO:0000313|EMBL:ABF54728.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
scnpilot_solids1_trim150_scaffold_1232_10
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10703..11419)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUX9_9SPHN
hypothetical protein rbh
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
scnpilot_solids1_trim150_scaffold_1232_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11672..12136
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFQ2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82246.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1232_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12187..14730
DNA (2544bp) protein (848aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
leuS; leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] rbh
Leucine--tRNA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W3Z7_9SPHN rbh
Displaying 12 items

View Taxonomy