ggKbase home page

scnpilot_solids1_trim150_scaffold_1608

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1608_1
unknown

Not on your lists

comp(1..96)
DNA (96bp) protein (32aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1608_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(747..1664)
DNA (918bp) protein (306aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CR23_VARPS rbh
LysR family transcriptional regulator; K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS19868.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
scnpilot_solids1_trim150_scaffold_1608_3
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1804..3087
DNA (1284bp) protein (428aa)
Major facilitator superfamily MFS_1 n=1 Tax=Burkholderia sp. RPE64 RepID=R4WUJ8_9BURK rbh
major facilitator superfamily MFS_1 rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:BAN28238.1}; TaxID=758793 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
scnpilot_solids1_trim150_scaffold_1608_4
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3084..3569
DNA (486bp) protein (162aa)
GCN5-related N-acetyltransferase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TR03_TISMK
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AFK55191.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_solids1_trim150_scaffold_1608_5
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3566..4033
DNA (468bp) protein (156aa)
Thioesterase superfamily protein n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CGQ9_ALCDB
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:AFT70766.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5).;"
scnpilot_solids1_trim150_scaffold_1608_6
unknown

Not on your lists

4037..4129
DNA (93bp) protein (31aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1608_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4353..5270
DNA (918bp) protein (306aa)
Transcriptional regulator, LysR family n=2 Tax=Afipia RepID=D6V0W2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30469.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_1608_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5234..5488)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI000375AF7D
Uncharacterized protein {ECO:0000313|EMBL:ETR77818.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1608_9
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5485..6672)
DNA (1188bp) protein (396aa)
Conjugation TrbI family protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHT7_GLUDA
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
Conjugation TrbI family protein {ECO:0000313|EMBL:ACI52565.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
scnpilot_solids1_trim150_scaffold_1608_10
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6669..7742)
DNA (1074bp) protein (358aa)
P-type conjugative transfer protein TrbG n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHT6_GLUDA
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:ACI52564.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
scnpilot_solids1_trim150_scaffold_1608_11
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7739..8428)
DNA (690bp) protein (230aa)
Conjugal transfer protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHT5_GLUDA
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
Conjugal transfer protein {ECO:0000313|EMBL:ACI52563.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
scnpilot_solids1_trim150_scaffold_1608_12
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8431..9789)
DNA (1359bp) protein (453aa)
P-type conjugative transfer protein TrbL n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHT4_GLUDA
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:ACI52562.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
scnpilot_solids1_trim150_scaffold_1608_13
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9985..11346)
DNA (1362bp) protein (454aa)
Conjugal transfer protein trbE n=1 Tax=Azospirillum amazonense Y2 RepID=G1XXY0_9PROT
Conjugal transfer protein trbE {ECO:0000313|EMBL:EGY01874.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
scnpilot_solids1_trim150_scaffold_1608_14
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11356..12525)
DNA (1170bp) protein (390aa)
AAA ATPase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHT1_GLUDA
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
AAA ATPase {ECO:0000313|EMBL:ACI52559.1}; Flags: Precursor;; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
scnpilot_solids1_trim150_scaffold_1608_15
unknown

Not on your lists

comp(12605..12712)
DNA (108bp) protein (36aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1608_16
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(12988..13917)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Y397_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIJ75627.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1608_17
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(13920..14300)
DNA (381bp) protein (127aa)
Putative transcriptional regulator, XRE family n=1 Tax=Ralstonia solanacearum K60-1 RepID=H5WBF3_RALSL
XRE family transcriptional regulator {ECO:0000313|EMBL:KIJ75636.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
XRE family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1608_18
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14466..15575
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037ABCE5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJZ34115.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1608_19
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15572..16729
DNA (1158bp) protein (386aa)
UBA/THIF-type NAD/FAD binding fold protein n=1 Tax=uncultured bacterium A1Q1_fos_660 RepID=L7VVC0_9BACT rbh
UBA/THIF-type NAD/FAD binding fold protein {ECO:0000313|EMBL:GAO21458.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
UBA/THIF-type NAD/FAD binding protein rbh
Displaying 19 items

View Taxonomy