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scnpilot_solids1_trim150_scaffold_1811

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1811_1
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..643
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036D0EB0
Aldehyde oxidase {ECO:0000313|EMBL:KJV29669.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
scnpilot_solids1_trim150_scaffold_1811_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(679..2955)
DNA (2277bp) protein (759aa)
ATP-dependent Clp protease ATP-binding subunit ClpA (EC:3.4.21.92)
ATP-dependent Clp protease subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEV9_9GAMM
ATP-dependent Clp protease subunit {ECO:0000313|EMBL:EIL98000.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_1811_3
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2997..3329)
DNA (333bp) protein (111aa)
ATP-dependent Clp protease adapter protein ClpS id=2473901 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_solids1_trim150_scaffold_1811_4
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3438..3929
DNA (492bp) protein (164aa)
7,8-dihydro-8-oxoguanine-triphosphatase n=1 Tax=Dyella ginsengisoli RepID=UPI00034D8C01
7,8-dihydro-8-oxoguanine-triphosphatase {ECO:0000313|EMBL:KGI78345.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ADP-ribose pyrophosphatase
scnpilot_solids1_trim150_scaffold_1811_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3926..5041
DNA (1116bp) protein (372aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNK9_9GAMM
scnpilot_solids1_trim150_scaffold_1811_6
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5038..5658
DNA (621bp) protein (207aa)
High frequency lysogenization protein HflD homolog n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNK8_9GAMM
High frequency lysogenization protein HflD homolog {ECO:0000256|HAMAP-Rule:MF_00695}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
uncharacterized protein involved in purine metabolism
scnpilot_solids1_trim150_scaffold_1811_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6449..8257)
DNA (1809bp) protein (603aa)
Cl-channel voltage-gated family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W554_9GAMM rbh
Cl-channel voltage-gated family protein {ECO:0000313|EMBL:EIL94595.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
eriC; EriC chloride channel protein
scnpilot_solids1_trim150_scaffold_1811_8
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8581..10998
DNA (2418bp) protein (806aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Aconitate hydratase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNK6_9GAMM
aconitate hydratase 1
scnpilot_solids1_trim150_scaffold_1811_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10995..11300
DNA (306bp) protein (102aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
aconitate hydratase n=1 Tax=Dyella japonica RepID=UPI0002ECEBD9
aconitate hydratase 1
scnpilot_solids1_trim150_scaffold_1811_10
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11817..12053)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J2W4_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ79753.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
scnpilot_solids1_trim150_scaffold_1811_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12228..12656)
DNA (429bp) protein (143aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L4L4_FRAAD
Uncharacterized protein {ECO:0000313|EMBL:AHX12644.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein; K02655 type IV pilus assembly protein PilE
scnpilot_solids1_trim150_scaffold_1811_12

Not on your lists

comp(12678..16877)
DNA (4200bp) protein (1400aa)
Type 4 fimbrial biogenesis protein PilY1 n=1 Tax=mine drainage metagenome RepID=T0ZA38_9ZZZZ rbh
Type 4 fimbrial biogenesis protein PilY1 {ECO:0000313|EMBL:EQD41918.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Tfp pilus assembly protein, tip-associated adhesin PilY1; K02674 type IV pilus assembly protein PilY1
scnpilot_solids1_trim150_scaffold_1811_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16955..17626)
DNA (672bp) protein (224aa)
Type IV pilus assembly protein PilX n=1 Tax=mine drainage metagenome RepID=T1BWK3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AHX16111.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Tfp pilus assembly protein PilX; K02673 type IV pilus assembly protein PilX
scnpilot_solids1_trim150_scaffold_1811_14
unknown

Not on your lists

comp(17643..17828)
DNA (186bp) protein (62aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1811_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17838..19193)
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L4L7_FRAAD
Uncharacterized protein {ECO:0000313|EMBL:AHX16110.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein; K02672 type IV pilus assembly protein PilW
scnpilot_solids1_trim150_scaffold_1811_16
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19190..19771)
DNA (582bp) protein (194aa)
Type IV pilus modification protein PilV n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L4L8_FRAAD
type IV pilus modification protein PilV; K02671 type IV pilus assembly protein PilV
Type IV pilus modification protein PilV {ECO:0000313|EMBL:AFC86573.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_solids1_trim150_scaffold_1811_17
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19768..20337)
DNA (570bp) protein (190aa)
N-terminal methylation site n=1 Tax=gamma proteobacterium BDW918 RepID=I2JHM3_9GAMM
N-terminal methylation site {ECO:0000313|EMBL:EIF42475.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
type IV fimbrial fimt-related pilin; K08084 type IV fimbrial biogenesis protein FimT
scnpilot_solids1_trim150_scaffold_1811_18
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20583..21599)
DNA (1017bp) protein (339aa)
rfbD; dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase n=1 Tax=Xanthomonas oryzae RepID=UPI00030450A1
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:GAN45247.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_solids1_trim150_scaffold_1811_19
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21604..22179)
DNA (576bp) protein (192aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WSP6_9GAMM
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:KGI78488.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_solids1_trim150_scaffold_1811_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22340..23215)
DNA (876bp) protein (292aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJL0_9GAMM
scnpilot_solids1_trim150_scaffold_1811_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23728..24783)
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=M4NE19_9GAMM
scnpilot_solids1_trim150_scaffold_1811_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25110..25544
DNA (435bp) protein (145aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBV0_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGG88084.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1811_23
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26054..26491
DNA (438bp) protein (146aa)
Class II pilin PilE n=1 Tax=Rhodanobacter denitrificans RepID=I4WIX8_9GAMM
Fimbrial protein {ECO:0000313|EMBL:KJV30929.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
pilin; K02650 type IV pilus assembly protein PilA
scnpilot_solids1_trim150_scaffold_1811_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26598..28823
DNA (2226bp) protein (742aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WIX9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97321.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1811_25
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28859..31435
DNA (2577bp) protein (859aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L552_FRAAD
Uncharacterized protein {ECO:0000313|EMBL:AHX12278.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
Displaying 25 items

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