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scnpilot_solids1_trim150_scaffold_1868

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1868_1
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(95..1426)
DNA (1332bp) protein (444aa)
D-amino acid oxidase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JL53_AGRRK rbh
D-amino acid oxidase {ECO:0000313|EMBL:KEA08621.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
D-amino acid oxidase rbh
scnpilot_solids1_trim150_scaffold_1868_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1428..2123)
DNA (696bp) protein (232aa)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:KJX87059.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KJX87059.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Agropine synthesis reductase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CEL3_AGRT5 rbh
agropine synthesis reductase rbh
scnpilot_solids1_trim150_scaffold_1868_3
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2129..2626)
DNA (498bp) protein (166aa)
Transcriptional regulator, MarR family n=2 Tax=Agrobacterium RepID=F0L9X5_AGRSH
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ADY66167.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
scnpilot_solids1_trim150_scaffold_1868_4
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2756..4405)
DNA (1650bp) protein (550aa)
ATPase component of various ABC-type transport systems with duplicated ATPase domain n=1 Tax=Rhizobium sp. AP16 RepID=J2W8D5_9RHIZ rbh
ATPase component of various ABC-type transport systems with duplicated ATPase domain {ECO:0000313|EMBL:EJK78905.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
peptide ABC transporter; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein rbh
scnpilot_solids1_trim150_scaffold_1868_5
Brucella neotomae, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4481..4834)
DNA (354bp) protein (118aa)
hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC:1.2.1.60); K00151 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase n=3 Tax=Brucella abortus RepID=N7AZ78_BRUAO
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase {ECO:0000313|EMBL:EEY03240.1}; TaxID=520456 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella neotomae 5K33.;"
scnpilot_solids1_trim150_scaffold_1868_6
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4883..5173)
DNA (291bp) protein (97aa)
Phosphatase {ECO:0000313|EMBL:AJW78899.1}; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
scnpilot_solids1_trim150_scaffold_1868_7
Paracoccus sp. 39524, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5329..6486)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000366AC4A rbh
Uncharacterized protein {ECO:0000313|EMBL:KGJ16493.1}; TaxID=1525718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 39524.;"
Voltage-gated chloride channel
scnpilot_solids1_trim150_scaffold_1868_8
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6515..8065)
DNA (1551bp) protein (517aa)
Phospholipase D/transphosphatidylase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C2P2_9RHIZ rbh
Phospholipase D/transphosphatidylase {ECO:0000313|EMBL:EIM76094.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
phospholipase D/transphosphatidylase rbh
scnpilot_solids1_trim150_scaffold_1868_9
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8154..8846
DNA (693bp) protein (231aa)
Membrane-bound PQQ-dependent dehydrogenase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S7T3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEY44942.1}; Flags: Fragment;; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
membrane-bound PQQ-dependent dehydrogenase
scnpilot_solids1_trim150_scaffold_1868_10
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8777..9202)
DNA (426bp) protein (142aa)
Voltage-gated chloride channel n=3 Tax=Oligotropha carboxidovorans RepID=B6JH96_OLICO
Voltage-gated chloride channel {ECO:0000313|EMBL:CDM22823.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
putative chloride channel family protein
scnpilot_solids1_trim150_scaffold_1868_11
Marinomonas sp. S3726, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9372..10274)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E15CBB rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KJZ10322.1}; TaxID=579484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. S3726.;"
LysR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1868_12
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10427..10576
DNA (150bp) protein (50aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KH70_MESAW
mandelate racemase/muconate lactonizing protein
Isomerase {ECO:0000313|EMBL:ESY88805.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
Displaying 12 items

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